RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ISLRO14498 428 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 PDCD5O14737 125 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 GAS8-AS1O95177 125 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 C1QBP02746 253 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 RD3LP0DJH9 198 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 RPL5P46777 297 aaKnown RBP4.3□□□□□ -1.72
LIMA1-204ENST00000549064 HSPA13P48723 471 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 SUB1P53999 127 aaKnown RBP eCLIP4.3□□□□□ -1.72
LIMA1-204ENST00000549064 TAS2R60P59551 318 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 B2MP61769 119 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 ZNF876PQ49A33 203 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 ZFP1Q6P2D0 407 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 TMEM144Q7Z5S9 345 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 Q8N814 137 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 C11orf52Q96A22 123 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 ZNF2Q9BSG1 426 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-204ENST00000549064 EHFQ9NZC4 300 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 BOLA2-SMG1P6H3BVE0 249 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 GPR31O00270 319 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 IGKV1-5P01602 117 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 RAB3BP20337 219 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 CYCSP99999 105 aaKnown RBP4.29□□□□□ -1.72
LIMA1-204ENST00000549064 FGL1Q08830 312 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 TRAM1Q15629 374 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 BSXQ3C1V8 233 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 WFDC10BQ8IUB3 73 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 CMTM1Q8IZ96 169 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 DHRSXQ8N5I4 330 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 SAMD12Q8N8I0 201 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 Q8N9P0 234 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-204ENST00000549064 TMEM263Q8WUH6 116 aaKnown RBP4.29□□□□□ -1.72
LIMA1-204ENST00000549064 BORCS5Q969J3 196 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 ACY3Q96HD9 319 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 LINC00467Q9BRT7 94 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 CACNG5Q9UF02 275 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 LY96Q9Y6Y9 160 aa4.29□□□□□ -1.72
LIMA1-204ENST00000549064 TRAV9-2A0A087WT02 112 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 A0A087X002 238 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 TRAV1-2A0A0B4J238 106 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 ZNF98A6NK75 572 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 H0Y8G0 127 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 PSCAO43653 123 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 ADAP1O75689 374 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 DUSP14O95147 198 aaKnown RBP4.28□□□□□ -1.72
LIMA1-204ENST00000549064 PMP2P02689 132 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 RLN2P04090 185 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 MYL9P24844 172 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 PSMA1P25786 263 aaKnown RBP4.28□□□□□ -1.72
LIMA1-204ENST00000549064 TAS2R20P59543 309 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 SUPT4H1P63272 117 aaKnown RBP4.28□□□□□ -1.72
LIMA1-204ENST00000549064 WFDC2Q14508 124 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 MUC21Q5SSG8 566 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 SFXN4Q6P4A7 337 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 LYPD5Q6UWN5 251 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 ZNF493Q6ZR52 646 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 Q6ZTI0 123 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 C8orf59Q8N0T1 100 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-204ENST00000549064 TMEM256Q8N2U0 113 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 ARRDC1Q8N5I2 433 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 RNF182Q8N6D2 247 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 ENY2Q9NPA8 101 aa4.28□□□□□ -1.72
LIMA1-204ENST00000549064 TRAV8-2A0A0B4J237 113 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 A0A0G2JRQ6 117 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 RS1O15537 224 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 IGLV2-8P01709 118 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 SLC25A4P12235 298 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 PSMB9P28065 219 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 LYZP61626 148 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 RHOBP62745 196 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 HIST1H1AQ02539 215 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-204ENST00000549064 ZNF90Q03938 601 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 MLLT11Q13015 90 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-204ENST00000549064 OR8G2PQ6IF36 304 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 OR8I2Q8N0Y5 310 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 OR1B1Q8NGR6 318 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 OR5H6Q8NGV6 325 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 IL22RA2Q969J5 263 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 SLC25A38Q96DW6 304 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 PDCD10Q9BUL8 212 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 PARD6GQ9BYG4 376 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-204ENST00000549064 ACOT13Q9NPJ3 140 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 RHBDL2Q9NX52 303 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 ICOSQ9Y6W8 199 aa4.27□□□□□ -1.73
LIMA1-204ENST00000549064 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-204ENST00000549064 SCGNO76038 276 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 CRYGDP07320 174 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 EVI2AP22794 236 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 NUP62P37198 522 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-204ENST00000549064 HTR2BP41595 481 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 CBX5P45973 191 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 AKR1C2P52895 323 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 OR2F1Q13607 317 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 C2orf83Q53S99 150 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 C1orf194Q5T5A4 169 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 C22orf42Q6IC83 251 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 NOTCH2NLQ7Z3S9 236 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 CIRBP-AS1Q8TBR5 109 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 PPP1R14BQ96C90 147 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 MGLLQ99685 303 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms