RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SHANK2-AS3Q9BTD1 123 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 RPS27P42677 84 aaKnown RBP7.06□□□□□ -1.28
VPS13D-212ENST00000543766 SYNJ2BPP57105 145 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 PLXDC1Q8IUK5 500 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 NUP35Q8NFH5 326 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 IGHG4P01861 327 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 CRYGSP22914 178 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 TRANK1O15050 2925 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 M0R2P5 195 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 CLDN14O95500 239 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 EGR2P11161 476 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-212ENST00000543766 LGALS3P17931 250 aaKnown RBP7.05□□□□□ -1.28
VPS13D-212ENST00000543766 CCL1P22362 96 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 CFAP126Q5VTH2 177 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 ARHGAP21Q5T5U3 1957 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 EP300Q09472 2414 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-212ENST00000543766 SMKR1H3BMG3 65 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 CST6Q15828 149 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 RNF7Q9UBF6 113 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 SDK2Q58EX2 2172 aa7.05□□□□□ -1.28
VPS13D-212ENST00000543766 TRAV12-2A0A075B6T6 113 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 SMIM26A0A096LP01 95 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 SLC25A48Q6ZT89 311 aaKnown RBP7.04□□□□□ -1.28
VPS13D-212ENST00000543766 ZNF843Q8N446 348 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 TMEM75Q8N9X5 138 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 MGST2Q99735 147 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 Q9H3A6 140 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 LIME1Q9H400 295 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 DPH3P1Q9H4G8 78 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 R4GMQ9 66 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 RPL11P62913 178 aaKnown RBP7.04□□□□□ -1.28
VPS13D-212ENST00000543766 CRIP3Q6Q6R5 217 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 ABHD14BQ96IU4 210 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 AAMDCQ9H7C9 122 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 NOTCH4Q99466 2003 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 LOC107986453A0A1B0GWG9 222 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 AVPP01185 164 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 RSPO1Q2MKA7 263 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-212ENST00000543766 METTL26Q96S19 204 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 HDHD3Q9BSH5 251 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-212ENST00000543766 ZFHX2Q9C0A1 2572 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-212ENST00000543766 TMEM131Q92545 1883 aa7.04□□□□□ -1.28
VPS13D-212ENST00000543766 C5orf49A4QMS7 147 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 LYZL2Q7Z4W2 148 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 DCANP1Q8TF63 244 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 PGLYRP4Q96LB8 373 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 FRYLO94915 3013 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 IGKV1D-8A0A087WSZ0 117 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 IGLV1-36A0A0B4J1U3 117 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 LOC101059948A0A1B0GTJ6 334 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 C5orf67F2Z3F1 127 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 PRO0461Q9UI25 63 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 A0A1W2PNR3 127 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 C2orf70A6NJV1 201 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 WDR86Q86TI4 376 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 TMEM252Q8N6L7 170 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 CCL26Q9Y258 94 aa7.03□□□□□ -1.28
VPS13D-212ENST00000543766 J3QT63 122 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 IGHG3P01860 377 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 GCHFRP30047 84 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 CHAC1Q9BUX1 264 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 EPOPA6NHQ4 379 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 C8orf87E5RJ46 101 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 H7C2G1 150 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 PDCD6O75340 191 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 MDP1Q86V88 176 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 OR52N5Q8NH56 324 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 ARHGAP5-AS1Q96IT6 56 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 ZNF714Q96N38 554 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 SLC25A22Q9H936 323 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 KNTC1P50748 2209 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 UNC13CQ8NB66 2214 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 PCDH15Q96QU1 1955 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 MUC6Q6W4X9 2439 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 KMT2EQ8IZD2 1858 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 CISD3P0C7P0 127 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 SMCPP49901 116 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-212ENST00000543766 DPTQ07507 201 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 FAM222AQ5U5X8 452 aa7.02□□□□□ -1.29
VPS13D-212ENST00000543766 CCL16O15467 120 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 CRYGAP11844 174 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 DYNLT3P51808 116 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 CTXN1P60606 82 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 SOSTDC1Q6X4U4 206 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 ZNF295-AS1Q8N0V1 137 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 OR5AS1Q8N127 324 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 CD177Q8N6Q3 437 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 ALPK2Q86TB3 2170 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 C11orf94C9JXX5 98 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 K7EM74 188 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 SLC25A20O43772 301 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 GP9P14770 177 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 NDUFC2-KCTD14E9PQ53 114 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 FAM60AQ9NP50 221 aa7.01□□□□□ -1.29
VPS13D-212ENST00000543766 CACNA1HO95180 2353 aa7□□□□□ -1.29
VPS13D-212ENST00000543766 SS18L1O75177 396 aaPredicted RBP7□□□□□ -1.29
VPS13D-212ENST00000543766 MPV17P39210 176 aa7□□□□□ -1.29
VPS13D-212ENST00000543766 REG3AQ06141 175 aa7□□□□□ -1.29
VPS13D-212ENST00000543766 RPL18Q07020 188 aaKnown RBP7□□□□□ -1.29
VPS13D-212ENST00000543766 ARL16Q0P5N6 197 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms