RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	FOXI2	Q6ZQN5	318 aa		7.54	□□□□□ -1.2
CPSF7-221	ENST00000543545	LYPD1	Q8N2G4	141 aa		7.54	□□□□□ -1.2
CPSF7-221	ENST00000543545	MRAP	Q8TCY5	172 aa		7.54	□□□□□ -1.2
CPSF7-221	ENST00000543545	OTOR	Q9NRC9	128 aa		7.54	□□□□□ -1.2
CPSF7-221	ENST00000543545	PPP1R14D	Q9NXH3	145 aa		7.54	□□□□□ -1.2
CPSF7-221	ENST00000543545	RPH3AL	Q9UNE2	315 aa		7.54	□□□□□ -1.2
CPSF7-221	ENST00000543545	TRAV1-1	A0A0B4J248	108 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545		F6UB75	175 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545		M0R3E3	92 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	IGKV3-20	P01619	116 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	SLC25A5	P05141	298 aa	Known RBP	7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	ZNF705D	P0CH99	300 aa	Predicted RBP	7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	ZNF705B	P0CI00	300 aa	Predicted RBP	7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	PPT1	P50897	306 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	SUMO1	P63165	101 aa	Known RBP	7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	CCL20	P78556	96 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	HIST1H1A	Q02539	215 aa	Predicted RBP	7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	OR4B1	Q8NGF8	309 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	OR10J6P	Q8NGY7	276 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	RXFP4	Q8TDU9	374 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	GNG13	Q9P2W3	67 aa		7.53	□□□□□ -1.2
CPSF7-221	ENST00000543545	NOTCH1	P46531	2555 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545		A0A1W2PRE2	83 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	PRAC2	D3DTV9	90 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	PAGE4	O60829	102 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	DUSP14	O95147	198 aa	Known RBP	7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	IFNA1	P01562	189 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	RAB14	P61106	215 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	OR8A1	Q8NGG7	326 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	SUN5	Q8TC36	379 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	PCNP	Q8WW12	178 aa	Known RBP	7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	MRPL53	Q96EL3	112 aa	Known RBP	7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	CITED4	Q96RK1	184 aa		7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	SAV1	Q9H4B6	383 aa	Predicted RBP	7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545	YTHDF2	Q9Y5A9	579 aa	Known RBP	7.52	□□□□□ -1.21
CPSF7-221	ENST00000543545		A0A0J9YX75	114 aa		7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545	FAM74A7	A6NL05	159 aa		7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545		H3BMM0	161 aa		7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545	HLA-DRB4	P13762	266 aa		7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545	CNN1	P51911	297 aa	Known RBP	7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545	GDF5OS	Q5U4N7	250 aa		7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545	NKX6-2	Q9C056	277 aa	Predicted RBP	7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545	HLA-DRB4	X5D2U9	266 aa		7.51	□□□□□ -1.21
CPSF7-221	ENST00000543545	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	RBMY1B	A6NDE4	496 aa	Known RBP	7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	RBMY1E	A6NEQ0	496 aa	Known RBP	7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	GGTLC3	B5MD39	225 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545		F6UZH7	168 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545		K7EQM0	130 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	IGKV2D-40	P01614	121 aa	Predicted RBP	7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	RBMY1D	P0C7P1	496 aa	Known RBP	7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	FRMD6-AS1	P0C7T7	363 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	APOC4	P55056	127 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	NUTF2	P61970	127 aa	Known RBP	7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	GNG5	P63218	68 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	ERCC8	Q13216	396 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	HAGH	Q16775	308 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	GOLT1A	Q6ZVE7	132 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	ZNF767P	Q75MW2	155 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	TRPT1	Q86TN4	253 aa	Known RBP	7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	C5orf17	Q8NAS9	161 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545	MANBAL	Q9NQG1	85 aa		7.5	□□□□□ -1.21
CPSF7-221	ENST00000543545		A8MZ25	164 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	DIRC3	C9JPN6	131 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	C11orf94	C9JXX5	98 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	ATP5G3	P48201	142 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	FXYD7	P58549	80 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	TMEM78	Q5T7P6	136 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	ASCL2	Q99929	193 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	CSTL1	Q9H114	145 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	EPDR1	Q9UM22	224 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	ARL2-SNX15	V9GYD0	113 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	DNAH3	Q8TD57	4116 aa		7.49	□□□□□ -1.21
CPSF7-221	ENST00000543545	CA1	P00915	261 aa	Predicted RBP	7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	TCRA	P04437	139 aa		7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	MORN3	Q6PF18	240 aa	Predicted RBP	7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	ARL6IP6	Q8N6S5	226 aa		7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	SGK494	Q96LW2	274 aa		7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	LINC00477	Q96M19	166 aa		7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	VGLL1	Q99990	258 aa		7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	AGPAT4-IT1	Q9H0P7	198 aa		7.48	□□□□□ -1.21
CPSF7-221	ENST00000543545	KIR2DL5B	A0A0G2JN68	375 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	KIR2DL5B	A0A0G2JPC4	375 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	SERTM2	A0A1B0GWG4	89 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	NPIPB6	E9PJ23	425 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545		J3KRW8	73 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	PEX7	O00628	323 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	NMB	P08949	121 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	CT45A10	P0DMU9	189 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	BCL2	P10415	239 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	TSPO	P30536	169 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	TAGLN2	P37802	199 aa	Known RBP	7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	ZNF138	P52744	262 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	IFITM2	Q01629	132 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	KIR2DL5A	Q8N109	375 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	CYB561D1	Q8N8Q1	229 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	KIR2DL5B	Q8NHK3	375 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	HIST1H2BA	Q96A08	127 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	ATG101	Q9BSB4	218 aa		7.47	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms