RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ICAM4Q14773 271 aa12.66□□□□□ -0.38
LIG1-204ENST00000542460 STHQ8IWL8 128 aa12.66□□□□□ -0.38
LIG1-204ENST00000542460 SLC7A5P1Q8MH63 180 aa12.66□□□□□ -0.38
LIG1-204ENST00000542460 RPUSD4Q96CM3 377 aaKnown RBP12.66□□□□□ -0.38
LIG1-204ENST00000542460 Q9H3A6 140 aa12.66□□□□□ -0.38
LIG1-204ENST00000542460 TRAV1-1A0A0B4J248 108 aa12.65□□□□□ -0.38
LIG1-204ENST00000542460 ZNF705FA8MVS1 300 aaPredicted RBP12.65□□□□□ -0.38
LIG1-204ENST00000542460 ZNF705EA8MWA4 302 aaPredicted RBP12.65□□□□□ -0.38
LIG1-204ENST00000542460 TEX46H3BTG2 121 aa12.65□□□□□ -0.38
LIG1-204ENST00000542460 FRMD6-AS1P0C7T7 363 aa12.65□□□□□ -0.38
LIG1-204ENST00000542460 DEFB1P60022 68 aa12.65□□□□□ -0.38
LIG1-204ENST00000542460 TEX261Q6UWH6 196 aa12.65□□□□□ -0.38
LIG1-204ENST00000542460 OTORQ9NRC9 128 aa12.65□□□□□ -0.38
LIG1-204ENST00000542460 LOC102724200A0A096LPH7 203 aaPredicted RBP12.64□□□□□ -0.39
LIG1-204ENST00000542460 A0A0J9YX75 114 aa12.64□□□□□ -0.39
LIG1-204ENST00000542460 RBMY1BA6NDE4 496 aaKnown RBP12.64□□□□□ -0.39
LIG1-204ENST00000542460 RBMY1EA6NEQ0 496 aaKnown RBP12.64□□□□□ -0.39
LIG1-204ENST00000542460 F6UB75 175 aa12.64□□□□□ -0.39
LIG1-204ENST00000542460 RBMY1DP0C7P1 496 aaKnown RBP12.64□□□□□ -0.39
LIG1-204ENST00000542460 HLA-DRB4P13762 266 aa12.64□□□□□ -0.39
LIG1-204ENST00000542460 GDF5OSQ5U4N7 250 aa12.64□□□□□ -0.39
LIG1-204ENST00000542460 LINC00322Q6ZN03 302 aaPredicted RBP12.64□□□□□ -0.39
LIG1-204ENST00000542460 HLA-DRB4X5D2U9 266 aa12.64□□□□□ -0.39
LIG1-204ENST00000542460 A0A1B0GV50 99 aa12.63□□□□□ -0.39
LIG1-204ENST00000542460 A0A1W2PRE2 83 aa12.63□□□□□ -0.39
LIG1-204ENST00000542460 PGPA6NDG6 321 aa12.63□□□□□ -0.39
LIG1-204ENST00000542460 H3BMM0 161 aa12.63□□□□□ -0.39
LIG1-204ENST00000542460 M0R3E3 92 aa12.63□□□□□ -0.39
LIG1-204ENST00000542460 HBE1P02100 147 aa12.63□□□□□ -0.39
LIG1-204ENST00000542460 BLOC1S1P78537 153 aa12.63□□□□□ -0.39
LIG1-204ENST00000542460 TRPT1Q86TN4 253 aaKnown RBP12.63□□□□□ -0.39
LIG1-204ENST00000542460 IFNA7P01567 189 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 CSN1S1P47710 185 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 ZNF680Q8NEM1 530 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 OR8A1Q8NGG7 326 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 RXFP4Q8TDU9 374 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 PRAC2D3DTV9 90 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 DUSP14O95147 198 aaKnown RBP12.62□□□□□ -0.39
LIG1-204ENST00000542460 RPL35AP18077 110 aaKnown RBP12.62□□□□□ -0.39
LIG1-204ENST00000542460 PPT1P50897 306 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 CMTM2Q8TAZ6 248 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 CLUHP3Q96NS8 147 aa12.62□□□□□ -0.39
LIG1-204ENST00000542460 NKX6-2Q9C056 277 aaPredicted RBP12.62□□□□□ -0.39
LIG1-204ENST00000542460 ZNF705DP0CH99 300 aaPredicted RBP12.61□□□□□ -0.39
LIG1-204ENST00000542460 ZNF705BP0CI00 300 aaPredicted RBP12.61□□□□□ -0.39
LIG1-204ENST00000542460 CNN1P51911 297 aaKnown RBP12.61□□□□□ -0.39
LIG1-204ENST00000542460 UBE2G2P60604 165 aa12.61□□□□□ -0.39
LIG1-204ENST00000542460 SUMO1P63165 101 aaKnown RBP12.61□□□□□ -0.39
LIG1-204ENST00000542460 HIST1H1AQ02539 215 aaPredicted RBP12.61□□□□□ -0.39
LIG1-204ENST00000542460 ARL6IP6Q8N6S5 226 aa12.61□□□□□ -0.39
LIG1-204ENST00000542460 OR4B1Q8NGF8 309 aa12.61□□□□□ -0.39
LIG1-204ENST00000542460 OR10J6PQ8NGY7 276 aa12.61□□□□□ -0.39
LIG1-204ENST00000542460 YTHDF2Q9Y5A9 579 aaKnown RBP12.61□□□□□ -0.39
LIG1-204ENST00000542460 ARL2-SNX15V9GYD0 113 aa12.61□□□□□ -0.39
LIG1-204ENST00000542460 KIR2DL5BA0A0G2JN68 375 aa12.6□□□□□ -0.39
LIG1-204ENST00000542460 KIR2DL5BA0A0G2JPC4 375 aa12.6□□□□□ -0.39
LIG1-204ENST00000542460 FAM74A7A6NL05 159 aa12.6□□□□□ -0.39
LIG1-204ENST00000542460 PRB4P10163 310 aaPredicted RBP12.6□□□□□ -0.39
LIG1-204ENST00000542460 APOC4P55056 127 aa12.6□□□□□ -0.39
LIG1-204ENST00000542460 CCL20P78556 96 aa12.6□□□□□ -0.39
LIG1-204ENST00000542460 KIR2DL5AQ8N109 375 aa12.6□□□□□ -0.39
LIG1-204ENST00000542460 KIR2DL5BQ8NHK3 375 aa12.6□□□□□ -0.39
LIG1-204ENST00000542460 GGTLC3B5MD39 225 aa12.59□□□□□ -0.39
LIG1-204ENST00000542460 IGKV3-20P01619 116 aa12.59□□□□□ -0.39
LIG1-204ENST00000542460 SLC25A5P05141 298 aaKnown RBP12.59□□□□□ -0.39
LIG1-204ENST00000542460 NUTF2P61970 127 aaKnown RBP12.59□□□□□ -0.39
LIG1-204ENST00000542460 MORN3Q6PF18 240 aaPredicted RBP12.59□□□□□ -0.39
LIG1-204ENST00000542460 C5orf17Q8NAS9 161 aa12.59□□□□□ -0.39
LIG1-204ENST00000542460 CSTL1Q9H114 145 aa12.59□□□□□ -0.39
LIG1-204ENST00000542460 A8MTW9 85 aa12.58□□□□□ -0.4
LIG1-204ENST00000542460 DIRC3C9JPN6 131 aa12.58□□□□□ -0.4
LIG1-204ENST00000542460 PAGE4O60829 102 aa12.58□□□□□ -0.4
LIG1-204ENST00000542460 S100A1P23297 94 aa12.58□□□□□ -0.4
LIG1-204ENST00000542460 HAGHQ16775 308 aa12.58□□□□□ -0.4
LIG1-204ENST00000542460 B9D2Q9BPU9 175 aa12.58□□□□□ -0.4
LIG1-204ENST00000542460 RBAKDNA6NC62 111 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 NPIPB6E9PJ23 425 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 PMS2P11Q13670 270 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 CST9LP1Q5W188 147 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 LYPD6BQ8NI32 183 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 MANBALQ9NQG1 85 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 GNG13Q9P2W3 67 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 EPDR1Q9UM22 224 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 IGKV2-40A0A087WW87 121 aaPredicted RBP12.57□□□□□ -0.4
LIG1-204ENST00000542460 UBE2CO00762 179 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 IGKV2D-40P01614 121 aaPredicted RBP12.57□□□□□ -0.4
LIG1-204ENST00000542460 RAB14P61106 215 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 C9orf47Q6ZRZ4 202 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 SBSPONQ8IVN8 264 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 LINC00477Q96M19 166 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 PPP1R14DQ9NXH3 145 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 RPH3ALQ9UNE2 315 aa12.57□□□□□ -0.4
LIG1-204ENST00000542460 IFNA1P01562 189 aa12.56□□□□□ -0.4
LIG1-204ENST00000542460 TCRAP04437 139 aa12.56□□□□□ -0.4
LIG1-204ENST00000542460 GNG5P63218 68 aa12.56□□□□□ -0.4
LIG1-204ENST00000542460 AMTNQ6UX39 209 aa12.56□□□□□ -0.4
LIG1-204ENST00000542460 CCDC28AQ8IWP9 274 aa12.56□□□□□ -0.4
LIG1-204ENST00000542460 TCEAL7Q9BRU2 100 aa12.56□□□□□ -0.4
LIG1-204ENST00000542460 SERTM2A0A1B0GWG4 89 aa12.55□□□□□ -0.4
LIG1-204ENST00000542460 CA1P00915 261 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms