RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LINC00322Q6ZN03 302 aaPredicted RBP7.69□□□□□ -1.18
SS18-205ENST00000542420 PRNTQ86SH4 94 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 MRPS16Q9Y3D3 137 aaKnown RBP7.69□□□□□ -1.18
SS18-205ENST00000542420 ATMQ13315 3056 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 APOHP02749 345 aaPredicted RBP7.68□□□□□ -1.18
SS18-205ENST00000542420 GATA3P23771 443 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 GDF5OSQ5U4N7 250 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 Q6ZN92 141 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 GTSF1Q8WW33 167 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 CCL19Q99731 98 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 ZFAND3Q9H8U3 227 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 HIF1ANQ9NWT6 349 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 ATP6V0E1O15342 81 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 TSPOP30536 169 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 HINT1P49773 126 aaPredicted RBP7.68□□□□□ -1.18
SS18-205ENST00000542420 HNRNPA3P51991 378 aaKnown RBP7.68□□□□□ -1.18
SS18-205ENST00000542420 FAM120AOSQ5T036 256 aa7.68□□□□□ -1.18
SS18-205ENST00000542420 A0A1B0GUT8 65 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 F2Z2F3 143 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 SPINK4O60575 86 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 AMTP48728 403 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 SLC35B1P78383 322 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 BORCS7Q96B45 105 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 ZC2HC1AQ96GY0 325 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 NRN1Q9NPD7 142 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 DMXL2Q8TDJ6 3036 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 OR2T8A6NH00 312 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 SH2D7A6NKC9 451 aaPredicted RBP7.67□□□□□ -1.18
SS18-205ENST00000542420 IGF1P05019 195 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 OR5AL1P0C617 328 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 C15orf32Q32M92 178 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 ZNF493Q6ZR52 646 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 TCF24Q7RTU0 167 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 U3KQE9 123 aa7.67□□□□□ -1.18
SS18-205ENST00000542420 LOC102724200A0A096LPH7 203 aaPredicted RBP7.66□□□□□ -1.18
SS18-205ENST00000542420 PMCHL1Q16048 86 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 ZNF785A8K8V0 405 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 H3BTX0 84 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 CHEK1O14757 476 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 BUB3O43684 328 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 KIAA1644Q3SXP7 199 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 NIT1Q86X76 327 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 PGLYRP4Q96LB8 373 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 C17orf77Q96MU5 243 aa7.66□□□□□ -1.18
SS18-205ENST00000542420 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.65□□□□□ -1.18
SS18-205ENST00000542420 TRAV8-1A0A0A6YYK1 113 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 TRAV41A0A0B4J266 112 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 HSBP1O75506 76 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 ATP5G2Q06055 141 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 ECSCRQ19T08 205 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 USMG5Q96IX5 58 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 RCHY1Q96PM5 261 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 PRR25Q96S07 402 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 SMAD5-AS1Q9Y6J3 95 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 COL6A6A6NMZ7 2263 aa7.65□□□□□ -1.18
SS18-205ENST00000542420 SLC25A16P16260 332 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 CAMPP49913 170 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 CCDC140Q96MF4 163 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 METTL26Q96S19 204 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 SPTBN1Q01082 2364 aaKnown RBP7.64□□□□□ -1.19
SS18-205ENST00000542420 IGHV4-61A0A0C4DH41 118 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 A6NJY4 79 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 TAX1BP3O14907 124 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 GPR183P32249 361 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 PIFOQ8TCI5 191 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 SGK494Q96LW2 274 aa7.64□□□□□ -1.19
SS18-205ENST00000542420 TMEM189A5PLL7 270 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 A6NDX4 124 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 IGHG2P01859 326 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 CLEC3BP05452 202 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 CRIP1P50238 77 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 RIPPLY3P57055 190 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 LENEPQ9Y5L5 61 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 ABCA1O95477 2261 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 WNK2Q9Y3S1 2297 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 CLPSL1A2RUU4 121 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 B4DSR2 109 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 J3QLI3 93 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 M0R3E3 92 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 CRXO43186 299 aaPredicted RBP7.63□□□□□ -1.19
SS18-205ENST00000542420 MSMBP08118 114 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 KRTDAPP60985 99 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 VAMP3Q15836 100 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 ERASQ7Z444 233 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 CNFNQ9BYD5 112 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 LAMA5O15230 3695 aa7.63□□□□□ -1.19
SS18-205ENST00000542420 DCHS1Q96JQ0 3298 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 TMEM89A2RUT3 159 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 K7ERU9 68 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 NDUFA4O00483 81 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 SH2D1AO60880 128 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 SAP30O75446 220 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 ATP5J2P56134 94 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 LCN12Q6JVE5 192 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 KLHDC1Q8N7A1 406 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 ASCL2Q99929 193 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 S4R3C0 116 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 U3KQK5 164 aa7.62□□□□□ -1.19
SS18-205ENST00000542420 ATRXP46100 2492 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms