RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 IGHV3-66A0A0C4DH42 116 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 NPYP01303 97 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 IGLV1-47P01700 117 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 FGF6P10767 208 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 GRNP28799 593 aaKnown RBP8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 HIST1H1AQ02539 215 aaPredicted RBP8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 FAM71F2Q6NXP2 309 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 C12orf54Q6X4T0 127 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 LINC00311Q8N616 119 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 FAM57AQ8TBR7 257 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 RNF125Q96EQ8 232 aa8.14□□□□□ -1.11
CDC42SE1-207ENST00000540998 SH2D1AO60880 128 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 CEACAM4O75871 244 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 HES1Q14469 280 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 PSG3Q16557 428 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 PRELID3AQ96N28 172 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 CHD8Q9HCK8 2581 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 RIGQ13278 110 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 TMEM30BQ3MIR4 351 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 TMEM97Q5BJF2 176 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 OR10AG1Q8NH19 301 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 ZNF414Q96IQ9 312 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 VGLL1Q99990 258 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 SHANK2-AS3Q9BTD1 123 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 NCOR2Q9Y618 2525 aa8.13□□□□□ -1.11
CDC42SE1-207ENST00000540998 SHISA9B4DS77 424 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 HOXB4P17483 251 aaPredicted RBP8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 MRPL51Q4U2R6 128 aaKnown RBP8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 SAPCD1Q5SSQ6 148 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 C16orf54Q6UWD8 224 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 Q6ZQT7 251 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 LINC01560Q8TB33 94 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 SOX21Q9Y651 276 aaPredicted RBP8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 SPRY2O43597 315 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 ZNF207O43670 478 aaKnown RBP8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 EGR2P11161 476 aaPredicted RBP8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 MEGF9Q9H1U4 602 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 IGHV3-49A0A0A0MS15 119 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 H3BRN7 92 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 K7ERJ3 54 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 PLP1P60201 277 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 NDPQ00604 133 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 COTL1Q14019 142 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 SMIM12Q96EX1 92 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 SCNM1Q9BWG6 230 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 AGRNO00468 2067 aa8.12□□□□□ -1.11
CDC42SE1-207ENST00000540998 IGKV2D-26A0A0A0MRZ7 120 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 PPIAL4CA0A0B4J2A2 164 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 CD5LO43866 347 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 PPIAL4GP0DN37 164 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 CSN1S1P47710 185 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 ERCC8Q13216 396 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 TWIST1Q15672 202 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 PVRIGQ6DKI7 326 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 GFRALQ6UXV0 394 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 TMEM189A5PLL7 270 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 MRPS12O15235 138 aaKnown RBP8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 RBPJQ06330 500 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 KIR3DS1Q14943 382 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 FAM162BQ5T6X4 162 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 ABHD17AQ96GS6 310 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 SPG11Q96JI7 2443 aa8.11□□□□□ -1.11
CDC42SE1-207ENST00000540998 CELSR2Q9HCU4 2923 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 GAGE10A6NGK3 116 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 GNG7O60262 68 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 CT45A10P0DMU9 189 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 TMEM11P17152 192 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 RNF182Q8N6D2 247 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 FBLL1A6NHQ2 334 aaKnown RBP8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 PRAC2D3DTV9 90 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 PRRG2O14669 202 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 APOBEC3AP31941 199 aaPredicted RBP8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 CKS2P33552 79 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 C3orf36Q3SXR2 165 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 FAM104BQ5XKR9 115 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 TMEM14CQ9P0S9 112 aa8.1□□□□□ -1.11
CDC42SE1-207ENST00000540998 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 GOSR1O95249 250 aa8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 ZNF575Q86XF7 245 aa8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 MS4A6AQ9H2W1 248 aa8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 PEF1Q9UBV8 284 aaKnown RBP8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 NCBP2LA6PVI3 153 aaKnown RBP8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 F8W735 103 aaPredicted RBP8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 ORM1P02763 201 aa8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 ORMDL3Q8N138 153 aa8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 DYNAPQ8N1N2 210 aa8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 DEFB104AQ8WTQ1 72 aa8.09□□□□□ -1.11
CDC42SE1-207ENST00000540998 FANCD2OSQ96PS1 177 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 SPTBN4Q9H254 2564 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 TRAV26-2A0A0B4J265 109 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 NDUFS7O75251 213 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 IGFL3Q6UXB1 125 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 MTURNQ8N3F0 131 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 Q8NA96 180 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 IFI27L1Q96BM0 104 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 CSMD2Q7Z408 3487 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 K7EQM0 130 aa8.08□□□□□ -1.12
CDC42SE1-207ENST00000540998 A0A0G2JLM5 398 aa8.07□□□□□ -1.12
CDC42SE1-207ENST00000540998 FAM90A27PA6NNH2 459 aa8.07□□□□□ -1.12
CDC42SE1-207ENST00000540998 IGHG4P01861 327 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms