RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 A0A1W2PRE2 83 aa12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 H3BMM0 161 aa12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 TRPT1Q86TN4 253 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 FAM213BQ8TBF2 198 aa12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 ZNF503Q96F45 646 aa12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 TCEAL7Q9BRU2 100 aa12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 ZMAT4Q9H898 229 aa12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 TRAV1-1A0A0B4J248 108 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 K7EQM0 130 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 NDUFB4O95168 129 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 RANP62826 216 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 BLOC1S1P78537 153 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 Q6ZWC4 215 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 OR8A1Q8NGG7 326 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 SFT2D1Q8WV19 159 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 PPP1R14DQ9NXH3 145 aa12.94□□□□□ -0.34
CLSTN3-210ENST00000540931 RBAKDNA6NC62 111 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 FBLL1A6NHQ2 334 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 SLC17A3O00476 420 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 SLC25A5P05141 298 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 NKX2-5P52952 324 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 ICAM4Q14773 271 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 IQCF2Q8IXL9 164 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 RNF182Q8N6D2 247 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 CITED4Q96RK1 184 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 SPATA25Q9BR10 227 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 WFDC10AQ9H1F0 79 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 Q9H3A6 140 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 TP53TG1Q9Y2A0 90 aa12.93□□□□□ -0.34
CLSTN3-210ENST00000540931 RBMY1BA6NDE4 496 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 RBMY1EA6NEQ0 496 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 HMGB3O15347 200 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 RBMY1DP0C7P1 496 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 TSPOP30536 169 aa12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 TAGLN2P37802 199 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 FHITP49789 147 aa12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 ZNF726P1Q15940 193 aa12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 C20orf173Q96LM9 149 aa12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 LINC00477Q96M19 166 aa12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 ODF3Q96PU9 254 aa12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 TXNDC17Q9BRA2 123 aa12.92□□□□□ -0.34
CLSTN3-210ENST00000540931 PGPA6NDG6 321 aa12.91□□□□□ -0.34
CLSTN3-210ENST00000540931 KNCNA6PVL3 124 aa12.91□□□□□ -0.34
CLSTN3-210ENST00000540931 A8MTW9 85 aa12.91□□□□□ -0.34
CLSTN3-210ENST00000540931 HAGHQ16775 308 aa12.91□□□□□ -0.34
CLSTN3-210ENST00000540931 C5orf17Q8NAS9 161 aa12.91□□□□□ -0.34
CLSTN3-210ENST00000540931 OR4B1Q8NGF8 309 aa12.91□□□□□ -0.34
CLSTN3-210ENST00000540931 TRBV7-9A0A0J9YWB2 115 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 F6UZH7 168 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 H3BTX0 84 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 IFNA1P01562 189 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 IFNA7P01567 189 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 RPL35AP18077 110 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 HIST1H1AQ02539 215 aaPredicted RBP12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 PMS2P11Q13670 270 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 TMEM78Q5T7P6 136 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 MANBALQ9NQG1 85 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 RYR3Q15413 4870 aa12.9□□□□□ -0.34
CLSTN3-210ENST00000540931 ZNF705EA8MWA4 302 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-210ENST00000540931 NMBP08949 121 aa12.89□□□□□ -0.35
CLSTN3-210ENST00000540931 SNRPCP09234 159 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-210ENST00000540931 CNN1P51911 297 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-210ENST00000540931 IGFL4Q6B9Z1 124 aa12.89□□□□□ -0.35
CLSTN3-210ENST00000540931 EXOC3-AS1Q8N2X6 119 aa12.89□□□□□ -0.35
CLSTN3-210ENST00000540931 LENEPQ9Y5L5 61 aa12.89□□□□□ -0.35
CLSTN3-210ENST00000540931 CA1P00915 261 aaPredicted RBP12.88□□□□□ -0.35
CLSTN3-210ENST00000540931 ZNF124Q15973 351 aa12.88□□□□□ -0.35
CLSTN3-210ENST00000540931 C9orf47Q6ZRZ4 202 aa12.88□□□□□ -0.35
CLSTN3-210ENST00000540931 SSX7Q7RTT5 188 aa12.88□□□□□ -0.35
CLSTN3-210ENST00000540931 SBSPONQ8IVN8 264 aa12.88□□□□□ -0.35
CLSTN3-210ENST00000540931 HIST1H2BAQ96A08 127 aa12.88□□□□□ -0.35
CLSTN3-210ENST00000540931 TM2D3Q9BRN9 247 aa12.88□□□□□ -0.35
CLSTN3-210ENST00000540931 NPIPB6E9PJ23 425 aa12.87□□□□□ -0.35
CLSTN3-210ENST00000540931 LEPP41159 167 aa12.87□□□□□ -0.35
CLSTN3-210ENST00000540931 SUMO1P63165 101 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-210ENST00000540931 ALKAL2Q6UX46 152 aa12.87□□□□□ -0.35
CLSTN3-210ENST00000540931 RCHY1Q96PM5 261 aa12.87□□□□□ -0.35
CLSTN3-210ENST00000540931 C20orf144Q9BQM9 153 aa12.87□□□□□ -0.35
CLSTN3-210ENST00000540931 DNAH3Q8TD57 4116 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 ZNF705FA8MVS1 300 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 DIRC3C9JPN6 131 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 BOLA2-SMG1P6H3BVE0 249 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 M0R3E3 92 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 HLA-DMBP28068 263 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 CDKN1BP46527 198 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 FGF8P55075 233 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 GDF5OSQ5U4N7 250 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 TEX261Q6UWH6 196 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 PLA2G2EQ9NZK7 142 aa12.86□□□□□ -0.35
CLSTN3-210ENST00000540931 FAM74A7A6NL05 159 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 F6UB75 175 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 SPRY2O43597 315 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 TMEM256Q8N2U0 113 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 RNF183Q96D59 192 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 ATG101Q9BSB4 218 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 EPDR1Q9UM22 224 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 BOLA1Q9Y3E2 137 aa12.85□□□□□ -0.35
CLSTN3-210ENST00000540931 TENM3Q9P273 2699 aa12.84□□□□□ -0.35
CLSTN3-210ENST00000540931 S100A9P06702 114 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-210ENST00000540931 ZNF138P52744 262 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms