RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 WFDC1Q9HC57 220 aa10.14□□□□□ -0.79
USP28-209ENST00000540925 DKK2Q9UBU2 259 aa10.14□□□□□ -0.79
USP28-209ENST00000540925 HERC2O95714 4834 aa10.13□□□□□ -0.79
USP28-209ENST00000540925 TRAV10A0A0B4J240 114 aa10.13□□□□□ -0.79
USP28-209ENST00000540925 INSP01308 110 aa10.13□□□□□ -0.79
USP28-209ENST00000540925 HIST1H1EP10412 219 aaKnown RBP10.13□□□□□ -0.79
USP28-209ENST00000540925 LGALS9CQ6DKI2 356 aa10.13□□□□□ -0.79
USP28-209ENST00000540925 KCNIP2Q9NS61 270 aa10.13□□□□□ -0.79
USP28-209ENST00000540925 APLNQ9ULZ1 77 aa10.13□□□□□ -0.79
USP28-209ENST00000540925 TRAV12-2A0A075B6T6 113 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 LOC102723971A0A1B0GUV8 181 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 PLAC8L1A1L4L8 177 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 NPIPB6E9PJ23 425 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 HBE1P02100 147 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 SPART-AS1P0CW21 52 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 PYYP10082 97 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 TSPOP30536 169 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 OXA1LQ15070 435 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 FCN2Q15485 313 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 RRN3P1Q2M238 152 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 ZNF767PQ75MW2 155 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 MIR17HGQ75NE6 70 aa10.12□□□□□ -0.79
USP28-209ENST00000540925 LY6G6CO95867 125 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 PRM2P04554 102 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 CDKN1BP46527 198 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 KIR3DS1Q14943 382 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 FAM222AQ5U5X8 452 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 FXYD5Q96DB9 178 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 ZNF503Q96F45 646 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 ODF3Q96PU9 254 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 MRPL32Q9BYC8 188 aaKnown RBP10.11□□□□□ -0.79
USP28-209ENST00000540925 FUT9Q9Y231 359 aa10.11□□□□□ -0.79
USP28-209ENST00000540925 TEX48A0A1B0GUV7 120 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 IGLL5B9A064 214 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 C17orf112F2Z3M2 114 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 M0R3E3 92 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 CT45A10P0DMU9 189 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 EMP1P54849 157 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 RHOBP62745 196 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 TMEM256Q8N2U0 113 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 RPP25LQ8N5L8 163 aaKnown RBP10.1□□□□□ -0.79
USP28-209ENST00000540925 SMIM3Q9BZL3 60 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 MED28Q9H204 178 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 YTHDF2Q9Y5A9 579 aaKnown RBP10.1□□□□□ -0.79
USP28-209ENST00000540925 FAT2Q9NYQ8 4349 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 RYR1P21817 5038 aa10.1□□□□□ -0.79
USP28-209ENST00000540925 DNAH17Q9UFH2 4485 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 IGHV4-4A0A075B6R2 117 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 DEFB131BA0A096LNP1 70 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 ZNF705GA8MUZ8 300 aaPredicted RBP10.09□□□□□ -0.79
USP28-209ENST00000540925 AZU1P20160 251 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 Q5BKY6 102 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 OR10J6PQ8NGY7 276 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 ASB13Q8WXK3 278 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 FAM19A4Q96LR4 140 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 AQP10Q96PS8 301 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 C20orf144Q9BQM9 153 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 NIPSNAP3BQ9BS92 247 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 TMEM208Q9BTX3 173 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 PRELID1Q9Y255 219 aa10.09□□□□□ -0.79
USP28-209ENST00000540925 IFNA5P01569 189 aa10.08□□□□□ -0.8
USP28-209ENST00000540925 GIPP09681 153 aaPredicted RBP10.08□□□□□ -0.8
USP28-209ENST00000540925 TAS2R60P59551 318 aa10.08□□□□□ -0.8
USP28-209ENST00000540925 FFAR4Q5NUL3 377 aa10.08□□□□□ -0.8
USP28-209ENST00000540925 GFI1BQ5VTD9 330 aa10.08□□□□□ -0.8
USP28-209ENST00000540925 EXOC3-AS1Q8N2X6 119 aa10.08□□□□□ -0.8
USP28-209ENST00000540925 OR51M1Q9H341 326 aa10.08□□□□□ -0.8
USP28-209ENST00000540925 PLA2G2EQ9NZK7 142 aa10.08□□□□□ -0.8
USP28-209ENST00000540925 NBEAP1P0C6P0 100 aa10.07□□□□□ -0.8
USP28-209ENST00000540925 RNASE8Q8TDE3 154 aaKnown RBP10.07□□□□□ -0.8
USP28-209ENST00000540925 BLNKQ8WV28 456 aa10.07□□□□□ -0.8
USP28-209ENST00000540925 RNF141Q8WVD5 230 aa10.07□□□□□ -0.8
USP28-209ENST00000540925 PAXXQ9BUH6 204 aa10.07□□□□□ -0.8
USP28-209ENST00000540925 PPP1R14DQ9NXH3 145 aa10.07□□□□□ -0.8
USP28-209ENST00000540925 TIMM9Q9Y5J7 89 aa10.07□□□□□ -0.8
USP28-209ENST00000540925 HECTD4Q9Y4D8 3996 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 PCLOQ9Y6V0 5065 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 LYRM9A8MSI8 78 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 KLLNB2CW77 178 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 G3V3Q6 166 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 H7BYZ3 331 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 ICAM4Q14773 271 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 RGS21Q2M5E4 152 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 C9orf47Q6ZRZ4 202 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 SCGB1C1Q8TD33 95 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 PHYHIPLQ96FC7 376 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 LINC01587Q99440 93 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 AGPAT4-IT1Q9H0P7 198 aa10.06□□□□□ -0.8
USP28-209ENST00000540925 RNF222A6NCQ9 220 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 OR10J4P0C629 311 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 CRISP2P16562 243 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 LEPP41159 167 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 ERCC8Q13216 396 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 ZNF493Q6ZR52 646 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 OR2G3Q8NGZ4 309 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 C16orf74Q96GX8 76 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 FAM210BQ96KR6 192 aa10.05□□□□□ -0.8
USP28-209ENST00000540925 OR7C2O60412 319 aa10.04□□□□□ -0.8
USP28-209ENST00000540925 M6PRP20645 277 aa10.04□□□□□ -0.8
USP28-209ENST00000540925 KHDC3LQ587J8 217 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms