RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 VCYO14598 125 aa11.29□□□□□ -0.6
COLCA1-204ENST00000540738 SMPXQ9UHP9 88 aa11.29□□□□□ -0.6
COLCA1-204ENST00000540738 PLA2G2AP14555 144 aa11.29□□□□□ -0.6
COLCA1-204ENST00000540738 APOMO95445 188 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 HBDP02042 147 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 GP9P14770 177 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 CKS1BP61024 79 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 LINC01559Q495D7 138 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 IGHV1OR15-1A0A075B7D0 117 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 SPATA45Q537H7 98 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 SPRNQ5BIV9 151 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 RNASE1P07998 156 aaKnown RBP11.28□□□□□ -0.6
COLCA1-204ENST00000540738 SMIM12Q96EX1 92 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 IMMP2LQ96T52 175 aa11.28□□□□□ -0.6
COLCA1-204ENST00000540738 LINC00587B1AMM8 73 aa11.27□□□□□ -0.6
COLCA1-204ENST00000540738 LYZL1Q6UWQ5 148 aa11.27□□□□□ -0.6
COLCA1-204ENST00000540738 A8MWV9 139 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 LBHQ53QV2 105 aaPredicted RBP11.27□□□□□ -0.61
COLCA1-204ENST00000540738 MED13Q9UHV7 2174 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 FOXI2Q6ZQN5 318 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 Q6ZSR3 168 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 PLXNB3Q9ULL4 1909 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 COL4A3Q01955 1670 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 GUSBP1Q15486 140 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 Q86TA4 180 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 ATRXP46100 2492 aa11.27□□□□□ -0.61
COLCA1-204ENST00000540738 OBSL1O75147 1896 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 TRBV19A0A075B6N1 114 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 LOC107984156A0A0G2JMH3 177 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 H3BRN7 92 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 ARL17AQ8IVW1 177 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 TMEM75Q8N9X5 138 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 WISP2O76076 250 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 ZFP36P26651 326 aaKnown RBP11.26□□□□□ -0.61
COLCA1-204ENST00000540738 ERCC8Q13216 396 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 TMEM14CQ9P0S9 112 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 BLCAPP62952 87 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 SS18Q15532 418 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 TMEM95Q3KNT9 176 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 MORN3Q6PF18 240 aaPredicted RBP11.26□□□□□ -0.61
COLCA1-204ENST00000540738 AZU1P20160 251 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 SPXQ9BT56 116 aa11.26□□□□□ -0.61
COLCA1-204ENST00000540738 IGKV3D-20A0A0C4DH25 116 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 KNCNA6PVL3 124 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 CIDEAO60543 219 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 SRSF4Q08170 494 aaKnown RBP11.25□□□□□ -0.61
COLCA1-204ENST00000540738 RNF182Q8N6D2 247 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 IGLC1P0CG04 106 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 LINC00469Q8N7U9 141 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 IGHV7-81A0A0B4J1V7 117 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 SLC25A20O43772 301 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 DMRTA1Q5VZB9 504 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 TMEM256Q8N2U0 113 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 SIRPDQ9H106 197 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 TNFRSF13BO14836 293 aaPredicted RBP11.25□□□□□ -0.61
COLCA1-204ENST00000540738 PFN1P07737 140 aaKnown RBP11.25□□□□□ -0.61
COLCA1-204ENST00000540738 C14orf178Q8N769 122 aaPredicted RBP11.25□□□□□ -0.61
COLCA1-204ENST00000540738 WFDC11Q8NEX6 87 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 SSBP4Q9BWG4 385 aaPredicted RBP11.25□□□□□ -0.61
COLCA1-204ENST00000540738 GNB1LQ9BYB4 327 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 UQCR10Q9UDW1 63 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 CBY1Q9Y3M2 126 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 EVI2AP22794 236 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 INSL3P51460 131 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 LAGE3Q14657 143 aa11.25□□□□□ -0.61
COLCA1-204ENST00000540738 ARFGEF3Q5TH69 2177 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 RASL11AQ6T310 242 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 TRPT1Q86TN4 253 aaKnown RBP11.24□□□□□ -0.61
COLCA1-204ENST00000540738 TRAV8-1A0A0A6YYK1 113 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 PGPEP1LA6NFU8 196 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 ARMS2P0C7Q2 107 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 C5orf56Q8N8D9 126 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 THAP8Q8NA92 274 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 TRBV7-9A0A0J9YWB2 115 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 GAGE12BA1L429 117 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 GAGE7O76087 117 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 GAGE12FP0CL80 117 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 GAGE12GP0CL81 117 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 GAGE12IP0CL82 117 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 DEFB136Q30KP8 78 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 TEX43Q6ZNM6 134 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 MS4A6AQ9H2W1 248 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 A0A087X0M5 115 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 A0A1B0GW64 132 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 A0A1B0GX30 115 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 LYL1P12980 280 aa11.24□□□□□ -0.61
COLCA1-204ENST00000540738 PRB4P10163 310 aaPredicted RBP11.23□□□□□ -0.61
COLCA1-204ENST00000540738 DNAJC9-AS1A6NH13 148 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 ZNF25P17030 456 aaPredicted RBP11.23□□□□□ -0.61
COLCA1-204ENST00000540738 IGF2RP11717 2491 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 TMEM131Q92545 1883 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 LOC102724200A0A096LPH7 203 aaPredicted RBP11.23□□□□□ -0.61
COLCA1-204ENST00000540738 GZMBP10144 247 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 VPS25Q9BRG1 176 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 CYTL1Q9NRR1 136 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 CSPG4Q6UVK1 2322 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 IGHV4-31P0DP07 118 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 LIME1Q9H400 295 aa11.23□□□□□ -0.61
COLCA1-204ENST00000540738 IGLC7A0M8Q6 106 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 NDUFA3O95167 84 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms