RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 C10orf91Q5T1B1 145 aa9.65□□□□□ -0.86
CCDC42-202ENST00000539522 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.65□□□□□ -0.86
CCDC42-202ENST00000539522 RBPMS2Q6ZRY4 209 aaKnown RBP9.65□□□□□ -0.86
CCDC42-202ENST00000539522 LYPD1Q8N2G4 141 aa9.65□□□□□ -0.86
CCDC42-202ENST00000539522 ZNF586Q9NXT0 402 aa9.65□□□□□ -0.86
CCDC42-202ENST00000539522 TRAV8-2A0A0B4J237 113 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 H3BQ15 152 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 SNRPCP09234 159 aaKnown RBP9.64□□□□□ -0.87
CCDC42-202ENST00000539522 IGLC2P0DOY2 106 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 GALR1P47211 349 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 RANP62826 216 aaKnown RBP9.64□□□□□ -0.87
CCDC42-202ENST00000539522 SUMO1P63165 101 aaKnown RBP9.64□□□□□ -0.87
CCDC42-202ENST00000539522 LINC00322Q6ZN03 302 aaPredicted RBP9.64□□□□□ -0.87
CCDC42-202ENST00000539522 WFDC3Q8IUB2 231 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 CCDC28AQ8IWP9 274 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 DEFB125Q8N687 156 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 BLNKQ8WV28 456 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 LINC00052Q96N35 136 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 TCEAL7Q9BRU2 100 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 MAP6D1Q9H9H5 199 aa9.64□□□□□ -0.87
CCDC42-202ENST00000539522 TRBV19A0A075B6N1 114 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 TRAV2A0A0B4J234 112 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 ATF4P18848 351 aaPredicted RBP9.63□□□□□ -0.87
CCDC42-202ENST00000539522 ATP5G3P48201 142 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 MEOX2P50222 304 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 DEFB1P60022 68 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 RPL11P62913 178 aaKnown RBP9.63□□□□□ -0.87
CCDC42-202ENST00000539522 PDE6HQ13956 83 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 FAM74A3Q4VXF1 159 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 CYB561D1Q8N8Q1 229 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 C20orf173Q96LM9 149 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 NRN1Q9NPD7 142 aa9.63□□□□□ -0.87
CCDC42-202ENST00000539522 CARHSP1Q9Y2V2 147 aaKnown RBP9.63□□□□□ -0.87
CCDC42-202ENST00000539522 A0A087X0K7 114 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 PGPA6NDG6 321 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 SLC17A3O00476 420 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 ZNF253O75346 499 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 IGHV4-30-4P0DP06 118 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 PAFAH1B2P68402 229 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 PSG9Q00887 426 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 IGFL4Q6B9Z1 124 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 APRG1Q8IVJ8 170 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 RPUSD4Q96CM3 377 aaKnown RBP9.62□□□□□ -0.87
CCDC42-202ENST00000539522 OTORQ9NRC9 128 aa9.62□□□□□ -0.87
CCDC42-202ENST00000539522 AGRNO00468 2067 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 RBMY1BA6NDE4 496 aaKnown RBP9.61□□□□□ -0.87
CCDC42-202ENST00000539522 RBMY1EA6NEQ0 496 aaKnown RBP9.61□□□□□ -0.87
CCDC42-202ENST00000539522 OR4C46A6NHA9 309 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 A8MZ25 164 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 H3BTX0 84 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 NDUFB4O95168 129 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 APOC3P02656 99 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 RBMY1DP0C7P1 496 aaKnown RBP9.61□□□□□ -0.87
CCDC42-202ENST00000539522 HLA-DMBP28068 263 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 CEBPGP53567 150 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 Q9H3A6 140 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 ZMAT5Q9UDW3 170 aaKnown RBP9.61□□□□□ -0.87
CCDC42-202ENST00000539522 EPDR1Q9UM22 224 aa9.61□□□□□ -0.87
CCDC42-202ENST00000539522 OR11H12B2RN74 326 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 GGTLC3B5MD39 225 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 DNASE2O00115 360 aaPredicted RBP9.6□□□□□ -0.87
CCDC42-202ENST00000539522 ZNF688P0C7X2 276 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 PRB4P10163 310 aaPredicted RBP9.6□□□□□ -0.87
CCDC42-202ENST00000539522 SVBPQ8N300 66 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 ARL6IP6Q8N6S5 226 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 MRAPQ8TCY5 172 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 HIST1H2BAQ96A08 127 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 C11orf52Q96A22 123 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 FAM110AQ9BQ89 295 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 AAMDCQ9H7C9 122 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 CLEC5AQ9NY25 188 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 TENM3Q9P273 2699 aa9.6□□□□□ -0.87
CCDC42-202ENST00000539522 ZNF727A8MUV8 499 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 SLC25A5P05141 298 aaKnown RBP9.59□□□□□ -0.87
CCDC42-202ENST00000539522 S100A9P06702 114 aaKnown RBP9.59□□□□□ -0.87
CCDC42-202ENST00000539522 FRMD6-AS1P0C7T7 363 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 ADCYAP1P18509 176 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 DEFB131AP59861 70 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 TMEM241Q24JQ0 296 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 GDF5OSQ5U4N7 250 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 SAMD13Q5VXD3 122 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 GTSCR1Q86UQ5 136 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 RNF182Q8N6D2 247 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 C5orf17Q8NAS9 161 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 CMTM2Q8TAZ6 248 aa9.59□□□□□ -0.87
CCDC42-202ENST00000539522 SCO2A0A1W2PP80 73 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 SNAPINO95295 136 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 CSN1S1P47710 185 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 SMIM7Q9BQ49 75 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 SLC50A1Q9BRV3 221 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 NIPSNAP3BQ9BS92 247 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 PARLQ9H300 379 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 SRD5A3Q9H8P0 318 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 PRELID1Q9Y255 219 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 TGP01266 2768 aa9.58□□□□□ -0.88
CCDC42-202ENST00000539522 NBEAL2Q6ZNJ1 2754 aa9.57□□□□□ -0.88
CCDC42-202ENST00000539522 KNCNA6PVL3 124 aa9.57□□□□□ -0.88
CCDC42-202ENST00000539522 F6UB75 175 aa9.57□□□□□ -0.88
CCDC42-202ENST00000539522 ISLRO14498 428 aa9.57□□□□□ -0.88
CCDC42-202ENST00000539522 TAS2R60P59551 318 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms