RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TMEM37Q8WXS4 190 aa9.34□□□□□ -0.91
SS18-204ENST00000539244 SAT2Q96F10 170 aaPredicted RBP9.34□□□□□ -0.91
SS18-204ENST00000539244 PYGO2Q9BRQ0 406 aa9.34□□□□□ -0.91
SS18-204ENST00000539244 GGACTQ9BVM4 153 aa9.34□□□□□ -0.91
SS18-204ENST00000539244 A0A096LPF7 62 aa9.33□□□□□ -0.92
SS18-204ENST00000539244 NOL3O60936 208 aaKnown RBP9.33□□□□□ -0.92
SS18-204ENST00000539244 CT45A10P0DMU9 189 aa9.33□□□□□ -0.92
SS18-204ENST00000539244 LINC00315P59091 139 aa9.33□□□□□ -0.92
SS18-204ENST00000539244 MORN5Q5VZ52 161 aa9.33□□□□□ -0.92
SS18-204ENST00000539244 Q6ZTI0 123 aa9.33□□□□□ -0.92
SS18-204ENST00000539244 ZNF431Q8TF32 576 aaPredicted RBP9.33□□□□□ -0.92
SS18-204ENST00000539244 VSIG2Q96IQ7 327 aa9.33□□□□□ -0.92
SS18-204ENST00000539244 TMPRSS5Q9H3S3 457 aa9.33□□□□□ -0.92
SS18-204ENST00000539244 HERC1Q15751 4861 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 LINC00854A0A1B0GVQ3 168 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 NPIPB6E9PJ23 425 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 H3BQ15 152 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 COX7A2P2O60397 106 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 NDUFB6O95139 128 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 SNRPCP09234 159 aaKnown RBP9.32□□□□□ -0.92
SS18-204ENST00000539244 LEPP41159 167 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 ARL16Q0P5N6 197 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 OPCMLQ14982 345 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 MGST2Q99735 147 aa9.32□□□□□ -0.92
SS18-204ENST00000539244 RCL1Q9Y2P8 373 aaKnown RBP9.32□□□□□ -0.92
SS18-204ENST00000539244 TRAV12-3A0A0B4J271 114 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 EPM2AB3EWF7 344 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 OR4E1P0C645 316 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 GUK1Q16774 197 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 C10orf113Q5VZT2 155 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 C11orf72Q8NBR9 251 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 ZNF680Q8NEM1 530 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 LINC00467Q9BRT7 94 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 PGPEP1Q9NXJ5 209 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 FAT1Q14517 4588 aa9.31□□□□□ -0.92
SS18-204ENST00000539244 NAP1L6A6NFF2 107 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 H3BTX0 84 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 SIVA1O15304 175 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 ZNF253O75346 499 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 SLC25A5P05141 298 aaKnown RBP9.3□□□□□ -0.92
SS18-204ENST00000539244 S100A5P33763 92 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 IAH1Q2TAA2 248 aaPredicted RBP9.3□□□□□ -0.92
SS18-204ENST00000539244 CDPF1Q6NVV7 123 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 MRPL53Q96EL3 112 aaKnown RBP9.3□□□□□ -0.92
SS18-204ENST00000539244 DNAJC4Q9NNZ3 241 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 FLVCR2Q9UPI3 526 aa9.3□□□□□ -0.92
SS18-204ENST00000539244 TRGV2A0A075B6R0 118 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 C7orf66A4D0T2 115 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 KLLNB2CW77 178 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 J3KRW8 73 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 ZNF324O75467 553 aaPredicted RBP9.29□□□□□ -0.92
SS18-204ENST00000539244 SCGB1D2O95969 90 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 ANXA2RQ3ZCQ2 193 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 LCE2DQ5TA82 110 aaPredicted RBP9.29□□□□□ -0.92
SS18-204ENST00000539244 LYPD1Q8N2G4 141 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 FAM19A4Q96LR4 140 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 SRRQ9GZT4 340 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 GSN-AS1Q9NRJ2 163 aa9.29□□□□□ -0.92
SS18-204ENST00000539244 C7orf71A4D174 169 aa9.28□□□□□ -0.92
SS18-204ENST00000539244 MBPP02686 304 aaPredicted RBP9.28□□□□□ -0.92
SS18-204ENST00000539244 CAMLGP49069 296 aa9.28□□□□□ -0.92
SS18-204ENST00000539244 Q6ZRG5 221 aa9.28□□□□□ -0.92
SS18-204ENST00000539244 PTTG2Q9NZH5 202 aa9.28□□□□□ -0.92
SS18-204ENST00000539244 TRAV5A0A0B4J249 113 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 EREGO14944 169 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 SPINK4O60575 86 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 XGP55808 180 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 TCL1AP56279 114 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 ERVFC1-1P60608 527 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 RAB31Q13636 194 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 IBA57Q5T440 356 aaKnown RBP9.27□□□□□ -0.93
SS18-204ENST00000539244 EIF4E3Q8N5X7 224 aaKnown RBP9.27□□□□□ -0.93
SS18-204ENST00000539244 OR1L4Q8NGR5 311 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 MITD1Q8WV92 249 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 PFDN5Q99471 154 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 FUT9Q9Y231 359 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 DMBT1Q9UGM3 2413 aaPredicted RBP9.27□□□□□ -0.93
SS18-204ENST00000539244 VPS13BQ7Z7G8 4022 aa9.27□□□□□ -0.93
SS18-204ENST00000539244 TRBV19A0A075B6N1 114 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 TRGV1A0A0A0MS02 117 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 NXPH4O95158 308 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 CRISP2P16562 243 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 BTCP35070 178 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 PDE6HQ13956 83 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 BAK1Q16611 211 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 SPANXN2Q5MJ10 180 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 MIC13Q5XKP0 118 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 NRARPQ7Z6K4 114 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 ST6GAL2Q96JF0 529 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 LINC00477Q96M19 166 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 GSKIPQ9P0R6 139 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 WDR83OSQ9Y284 106 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 ICOSQ9Y6W8 199 aa9.26□□□□□ -0.93
SS18-204ENST00000539244 M0R3E3 92 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 PAX4O43316 350 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 NMBP08949 121 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 INAFM2P0DMQ5 153 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 CD300CQ08708 224 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 BTN1A1Q13410 526 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 VWC2Q2TAL6 325 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms