RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 IFITM2Q01629 132 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 GUCA2BQ16661 112 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 WFDC3Q8IUB2 231 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 GBGT1Q8N5D6 347 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 PCNPQ8WW12 178 aaKnown RBP9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 FAM167A-AS1Q96KT0 104 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 OVOL2Q9BRP0 275 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 A0A1B0GVY2 172 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 NBEAP1P0C6P0 100 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 PSMB3P49720 205 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 GUK1Q16774 197 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 DEFB114Q30KQ6 69 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 CD300EQ496F6 205 aaPredicted RBP9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 SAMD13Q5VXD3 122 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 LCN12Q6JVE5 192 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 DEFB125Q8N687 156 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 OR2K2Q8NGT1 345 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 C16orf92Q96LL3 132 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 AAMDCQ9H7C9 122 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 NRN1Q9NPD7 142 aa9.24□□□□□ -0.93
CLSTN3-208ENST00000538933 TRAV25A0A0B4J276 109 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 H3BTX0 84 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 CD7P09564 240 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 ID1P41134 155 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 UBE2G2P60604 165 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 PSG9Q00887 426 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 TMEM61Q8N0U2 210 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 FXYD5Q96DB9 178 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 SLC50A1Q9BRV3 221 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 WFDC10AQ9H1F0 79 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 TMPRSS5Q9H3S3 457 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 ZNF586Q9NXT0 402 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 GNG13Q9P2W3 67 aa9.23□□□□□ -0.93
CLSTN3-208ENST00000538933 A0A087X0K7 114 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 TRAV1-1A0A0B4J248 108 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 OR4C46A6NHA9 309 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 MRPS12O15235 138 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 IGLC2P0DOY2 106 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 CD81P60033 236 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 CST9LP1Q5W188 147 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 ZNF503Q96F45 646 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 MS4A6AQ9H2W1 248 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 MANBALQ9NQG1 85 aa9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 KLK5Q9Y337 293 aaPredicted RBP9.22□□□□□ -0.93
CLSTN3-208ENST00000538933 TRBV19A0A075B6N1 114 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 A0A0J9YWU9 116 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 H3BQ15 152 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 TSPAN4O14817 238 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 RGS13O14921 159 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 NMBP08949 121 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 SNRPD3P62318 126 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 RANP62826 216 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 PDE6HQ13956 83 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 CLLU1Q5K131 121 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 FAM90A2PQ658T7 463 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 CMTM2Q8TAZ6 248 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 SPAG8Q99932 426 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 SRD5A3Q9H8P0 318 aa9.21□□□□□ -0.94
CLSTN3-208ENST00000538933 ZNF253O75346 499 aa9.2□□□□□ -0.94
CLSTN3-208ENST00000538933 C17orf77Q96MU5 243 aa9.2□□□□□ -0.94
CLSTN3-208ENST00000538933 LINC00052Q96N35 136 aa9.2□□□□□ -0.94
CLSTN3-208ENST00000538933 Q9H3A6 140 aa9.2□□□□□ -0.94
CLSTN3-208ENST00000538933 CLEC5AQ9NY25 188 aa9.2□□□□□ -0.94
CLSTN3-208ENST00000538933 TRAV2A0A0B4J234 112 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 PGPA6NDG6 321 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 OR11H12B2RN74 326 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 ISLRO14498 428 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 PAGE4O60829 102 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 TAGLN2P37802 199 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 CSN1S1P47710 185 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 CCL20P78556 96 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 LYPD1Q8N2G4 141 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 ZNF738Q8NE65 137 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 NKX6-2Q9C056 277 aaPredicted RBP9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 EIF5A2Q9GZV4 153 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 OTORQ9NRC9 128 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 RPH3ALQ9UNE2 315 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 PRELID1Q9Y255 219 aa9.19□□□□□ -0.94
CLSTN3-208ENST00000538933 A0A1W2PRE2 83 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 K7EQG2 157 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 SLC17A3O00476 420 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 SLC25A5P05141 298 aaKnown RBP9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 ZNF688P0C7X2 276 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 CMC4P56277 68 aaPredicted RBP9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 ICAM4Q14773 271 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 TOR2AQ5JU69 321 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 IGFL4Q6B9Z1 124 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 EXOC3-AS1Q8N2X6 119 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 LYPD6BQ8NI32 183 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 ZNF331Q9NQX6 463 aaPredicted RBP9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 ARL2-SNX15V9GYD0 113 aa9.18□□□□□ -0.94
CLSTN3-208ENST00000538933 FAM74A7A6NL05 159 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 C11orf94C9JXX5 98 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 F6UZH7 168 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 NDUFB4O95168 129 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 BCL2P10415 239 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 SUMO1P63165 101 aaKnown RBP9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 PSMG4Q5JS54 123 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 RNF182Q8N6D2 247 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms