RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 PGLYRP4Q96LB8 373 aa5.16□□□□□ -1.58
USP28-206ENST00000538224 SGK494Q96LW2 274 aa5.16□□□□□ -1.58
USP28-206ENST00000538224 ALKBH7Q9BT30 221 aaPredicted RBP5.16□□□□□ -1.58
USP28-206ENST00000538224 S4R3C0 116 aa5.16□□□□□ -1.58
USP28-206ENST00000538224 WNK2Q9Y3S1 2297 aa5.16□□□□□ -1.58
USP28-206ENST00000538224 LOC102724200A0A096LPH7 203 aaPredicted RBP5.15□□□□□ -1.59
USP28-206ENST00000538224 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.15□□□□□ -1.59
USP28-206ENST00000538224 A0A1W2PS18 150 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 TMEM189A5PLL7 270 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 SH2D7A6NKC9 451 aaPredicted RBP5.15□□□□□ -1.59
USP28-206ENST00000538224 ZNF785A8K8V0 405 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 M0R3E3 92 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 BUB3O43684 328 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 IGHV3-23P01764 117 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 CLEC3BP05452 202 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 FRMD6-AS1P0C7T7 363 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 COX6B1P14854 86 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 KIAA1644Q3SXP7 199 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 C19orf54Q5BKX5 351 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 LINC00322Q6ZN03 302 aaPredicted RBP5.15□□□□□ -1.59
USP28-206ENST00000538224 TEX43Q6ZNM6 134 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 Q6ZWC4 215 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 GTSF1Q8WW33 167 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 CCDC140Q96MF4 163 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 C17orf77Q96MU5 243 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 NDUFAF3Q9BU61 184 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 VAMP8Q9BV40 100 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 NRN1Q9NPD7 142 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 GOLT1BQ9Y3E0 138 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 DOPEY1Q5JWR5 2465 aa5.15□□□□□ -1.59
USP28-206ENST00000538224 IGHV4-30-2A0A087WSY4 118 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 A0A0G2JLM5 398 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 A6NDX4 124 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 F2Z2F3 143 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 NDUFA4O00483 81 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 DLEU1O43261 78 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 NUPR1O60356 82 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 IGHG2P01859 326 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 TRGV3P03979 118 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 OR5AL1P0C617 328 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 ARL3P36405 182 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 KRTDAPP60985 99 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 PMCHL1Q16048 86 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 GDF5OSQ5U4N7 250 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 SAMD13Q5VXD3 122 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 RNASEKQ6P5S7 137 aaKnown RBP5.14□□□□□ -1.59
USP28-206ENST00000538224 CLEC19AQ6UXS0 136 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 C9orf139Q6ZV77 190 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 TMEM219Q86XT9 240 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 ZNF664Q8N3J9 261 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 LINC01356Q8N9X3 169 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 RCHY1Q96PM5 261 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 PRR25Q96S07 402 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 C20orf144Q9BQM9 153 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 PRO1933Q9H354 126 aa5.14□□□□□ -1.59
USP28-206ENST00000538224 IGSF10Q6WRI0 2623 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 IGKV2-40A0A087WW87 121 aaPredicted RBP5.13□□□□□ -1.59
USP28-206ENST00000538224 C20orf202A1L168 122 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 TMEM89A2RUT3 159 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 G3V318 75 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 H3BUX3 64 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 M0R2Z0 102 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 SH2D1AO60880 128 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 IGKV2D-40P01614 121 aaPredicted RBP5.13□□□□□ -1.59
USP28-206ENST00000538224 APOHP02749 345 aaPredicted RBP5.13□□□□□ -1.59
USP28-206ENST00000538224 NTF3P20783 257 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 G0S2P27469 103 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 CTRLP40313 264 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 CDKN1BP46527 198 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 HIST1H1AQ02539 215 aaPredicted RBP5.13□□□□□ -1.59
USP28-206ENST00000538224 TMEM78Q5T7P6 136 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 LCN12Q6JVE5 192 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 BRD3OSQ6XYD6 125 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 ZNF493Q6ZR52 646 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 PIFOQ8TCI5 191 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 ASCL2Q99929 193 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 SSBP4Q9BWG4 385 aaPredicted RBP5.13□□□□□ -1.59
USP28-206ENST00000538224 LENEPQ9Y5L5 61 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 SMAD5-AS1Q9Y6J3 95 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 U3KQE9 123 aa5.13□□□□□ -1.59
USP28-206ENST00000538224 CFAP46Q8IYW2 2715 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 CLPSL1A2RUU4 121 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 FAM181BA6NEQ2 426 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 FABP5P3A8MUU1 101 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 ARMS2P0C7Q2 107 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 IGHV4-38-2P0DP08 117 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 SMIM15Q7Z3B0 74 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 NIT1Q86X76 327 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 KLHDC1Q8N7A1 406 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 FER1L6-AS1Q8NA97 138 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 C8orf49Q96NF6 230 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 HSPB8Q9UJY1 196 aa5.12□□□□□ -1.59
USP28-206ENST00000538224 IGHV3OR16-10A0A075B7F0 116 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 OVOL1O14753 267 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 IGLV1-40P01703 118 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 C3orf79P0CE67 100 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 PF4V1P10720 104 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 PPIFP30405 207 aaKnown RBP5.11□□□□□ -1.59
USP28-206ENST00000538224 CRIP1P50238 77 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms