RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 DKK2Q9UBU2 259 aa3.59□□□□□ -1.83
USH1C-210ENST00000534556 PFDN2Q9UHV9 154 aa3.59□□□□□ -1.83
USH1C-210ENST00000534556 DNAH5Q8TE73 4624 aa3.59□□□□□ -1.84
USH1C-210ENST00000534556 IGHV4-4A0A075B6R2 117 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 LOC102723971A0A1B0GUV8 181 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 IGLL5B9A064 214 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 NPIPB6E9PJ23 425 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 BOLA2-SMG1P6H3BVE0 249 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 DUSP14O95147 198 aaKnown RBP3.58□□□□□ -1.84
USH1C-210ENST00000534556 OR10J4P0C629 311 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 DEFA1P59665 94 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 DEFA3P59666 94 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 HBG1P69891 147 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 HBG2P69892 147 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 GFI1BQ5VTD9 330 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 SSX7Q7RTT5 188 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 STX12Q86Y82 276 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 FAM19A4Q96LR4 140 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 VGLL1Q99990 258 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 C1QTNF4Q9BXJ3 329 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 AGPAT4-IT1Q9H0P7 198 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 TMEM14CQ9P0S9 112 aa3.58□□□□□ -1.84
USH1C-210ENST00000534556 YTHDF2Q9Y5A9 579 aaKnown RBP3.58□□□□□ -1.84
USH1C-210ENST00000534556 IGKV2-40A0A087WW87 121 aaPredicted RBP3.57□□□□□ -1.84
USH1C-210ENST00000534556 DEFB131BA0A096LNP1 70 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 TRAV10A0A0B4J240 114 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 RNF222A6NCQ9 220 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 SMIM9A6NGZ8 99 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 J3KRW8 73 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 MPDU1O75352 247 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 JTBO76095 146 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 PTTG1O95997 202 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 IGKV2D-40P01614 121 aaPredicted RBP3.57□□□□□ -1.84
USH1C-210ENST00000534556 RLN2P04090 185 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 NBEAP1P0C6P0 100 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 HIST1H1EP10412 219 aaKnown RBP3.57□□□□□ -1.84
USH1C-210ENST00000534556 CXCL2P19875 107 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 RAB2AP61019 212 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 NUTF2P61970 127 aaKnown RBP3.57□□□□□ -1.84
USH1C-210ENST00000534556 RHOBP62745 196 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 CYCSP99999 105 aaKnown RBP3.57□□□□□ -1.84
USH1C-210ENST00000534556 CD300CQ08708 224 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 ICAM4Q14773 271 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 FFAR4Q5NUL3 377 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 LGALS9CQ6DKI2 356 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 Q6ZRG5 221 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 ZFAND2AQ8N6M9 145 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 OR1L4Q8NGR5 311 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 RNASE8Q8TDE3 154 aaKnown RBP3.57□□□□□ -1.84
USH1C-210ENST00000534556 C2CD4CQ8TF44 421 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 BLNKQ8WV28 456 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 PFDN5Q99471 154 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 ATP5SQ99766 215 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 SLC50A1Q9BRV3 221 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 SLC25A31Q9H0C2 315 aa3.57□□□□□ -1.84
USH1C-210ENST00000534556 KLK5Q9Y337 293 aaPredicted RBP3.57□□□□□ -1.84
USH1C-210ENST00000534556 KIAA1109Q2LD37 5005 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 TRAV12-3A0A0B4J271 114 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 KLLNB2CW77 178 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 SMLR1H3BR10 107 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 HMGB3O15347 200 aaKnown RBP3.56□□□□□ -1.84
USH1C-210ENST00000534556 ZNF253O75346 499 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 ZNF324O75467 553 aaPredicted RBP3.56□□□□□ -1.84
USH1C-210ENST00000534556 INSP01308 110 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 HBE1P02100 147 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 AMBPP02760 352 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 TSPOP30536 169 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 CDKN1BP46527 198 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 BTN1A1Q13410 526 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 RAB31Q13636 194 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 OXA1LQ15070 435 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 ZNF726P1Q15940 193 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 RRN3P1Q2M238 152 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 SAMD13Q5VXD3 122 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 FAM122CQ6P4D5 195 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 Q8TAT8 98 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 LRRC20Q8TCA0 184 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 RNF141Q8WVD5 230 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 TVP23CQ96ET8 276 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 AQP10Q96PS8 301 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 NIPSNAP3BQ9BS92 247 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 MED28Q9H204 178 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 SH3BGRL3Q9H299 93 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 OR51M1Q9H341 326 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 TP53TG3Q9ULZ0 132 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 FUT9Q9Y231 359 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 GOLT1BQ9Y3E0 138 aa3.56□□□□□ -1.84
USH1C-210ENST00000534556 LRP1BQ9NZR2 4599 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 C11orf94C9JXX5 98 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 SPART-AS1P0CW21 52 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 HTN3P15516 51 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 CRISP2P16562 243 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 HOXA5P20719 270 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 ATP6V0CP27449 155 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 RANP62826 216 aaKnown RBP3.55□□□□□ -1.84
USH1C-210ENST00000534556 GUK1Q16774 197 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 RPL7L1Q6DKI1 246 aaKnown RBP3.55□□□□□ -1.84
USH1C-210ENST00000534556 TMEM88Q6PEY1 159 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 C9orf47Q6ZRZ4 202 aa3.55□□□□□ -1.84
USH1C-210ENST00000534556 LINC00612Q8N6U2 182 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms