RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IGHV3-49A0A0A0MS15 119 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 IGHV3-74A0A0B4J1X5 117 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 TRAV2A0A0B4J234 112 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 IGHV3-66A0A0C4DH42 116 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 A0A1W2PRE2 83 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 GAGE12BA1L429 117 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 GAGE12HA6NDE8 117 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 H3BQ15 152 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 TSPAN4O14817 238 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 HMGB3O15347 200 aaKnown RBP5.56□□□□□ -1.52
CD44-228ENST00000528455 ZNF253O75346 499 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 NDUFS6O75380 124 aaKnown RBP5.56□□□□□ -1.52
CD44-228ENST00000528455 IGLV1-51P01701 117 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 GP9P14770 177 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 CMC4P56277 68 aaPredicted RBP5.56□□□□□ -1.52
CD44-228ENST00000528455 CCL20P78556 96 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 PSG9Q00887 426 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 C9orf66Q5T8R8 295 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 RBPMS2Q6ZRY4 209 aaKnown RBP5.56□□□□□ -1.52
CD44-228ENST00000528455 TCF24Q7RTU0 167 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 TXNDC17Q9BRA2 123 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 KRTAP9-3Q9BYQ3 159 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 GPR61Q9BZJ8 451 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 SMDT1Q9H4I9 107 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 MED9Q9NWA0 146 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 ZNF586Q9NXT0 402 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 ARL2-SNX15V9GYD0 113 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 SAP30O75446 220 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 IFNA1P01562 189 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 OR10J4P0C629 311 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 PYYP10082 97 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 FGF8P55075 233 aaPredicted RBP5.55□□□□□ -1.52
CD44-228ENST00000528455 DYNLRB2Q8TF09 96 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 C17orf77Q96MU5 243 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 TMPRSS5Q9H3S3 457 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 NRN1Q9NPD7 142 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 MANBALQ9NQG1 85 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 DKK2Q9UBU2 259 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 ZMAT5Q9UDW3 170 aaKnown RBP5.55□□□□□ -1.52
CD44-228ENST00000528455 PRELID1Q9Y255 219 aa5.55□□□□□ -1.52
CD44-228ENST00000528455 RAB19A4D1S5 217 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 LINC00862A6NCI5 91 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 PGPA6NDG6 321 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 RBFOX3A6NFN3 312 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 DNASE2O00115 360 aaPredicted RBP5.54□□□□□ -1.52
CD44-228ENST00000528455 ISLRO14498 428 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 NDUFB4O95168 129 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 EDN2P20800 178 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 ID1P41134 155 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 RANP62826 216 aaKnown RBP5.54□□□□□ -1.52
CD44-228ENST00000528455 UBE2L3P68036 154 aaKnown RBP5.54□□□□□ -1.52
CD44-228ENST00000528455 BEAN1Q3B7T3 259 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 CD300EQ496F6 205 aaPredicted RBP5.54□□□□□ -1.52
CD44-228ENST00000528455 IGFL4Q6B9Z1 124 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 CCDC28AQ8IWP9 274 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 RXFP4Q8TDU9 374 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 DCANP1Q8TF63 244 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 FAM210AQ96ND0 272 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 SPAG8Q99932 426 aaPredicted RBP5.54□□□□□ -1.52
CD44-228ENST00000528455 TCEAL7Q9BRU2 100 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 SLC50A1Q9BRV3 221 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 MS4A6AQ9H2W1 248 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 AAMDCQ9H7C9 122 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 ZNF331Q9NQX6 463 aaPredicted RBP5.54□□□□□ -1.52
CD44-228ENST00000528455 VAX2Q9UIW0 290 aa5.54□□□□□ -1.52
CD44-228ENST00000528455 FAM74A7A6NL05 159 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 F6UZH7 168 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 K7EQG2 157 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 PAGE4O60829 102 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 EIF3GO75821 320 aaKnown RBP eCLIP5.53□□□□□ -1.52
CD44-228ENST00000528455 PEA15Q15121 130 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 PSG3Q16557 428 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 LCN12Q6JVE5 192 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 IQCF2Q8IXL9 164 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 TMEM61Q8N0U2 210 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 EIF4E3Q8N5X7 224 aaKnown RBP5.53□□□□□ -1.52
CD44-228ENST00000528455 BLNKQ8WV28 456 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 MRPL53Q96EL3 112 aaKnown RBP5.53□□□□□ -1.52
CD44-228ENST00000528455 FAM110AQ9BQ89 295 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 Q9H3A6 140 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 OTORQ9NRC9 128 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 GNG13Q9P2W3 67 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 ZNF256Q9Y2P7 627 aaPredicted RBP5.53□□□□□ -1.52
CD44-228ENST00000528455 NOTCH3Q9UM47 2321 aa5.53□□□□□ -1.52
CD44-228ENST00000528455 SORL1Q92673 2214 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 A0A1B0GV50 99 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 OR4C46A6NHA9 309 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 G3V4G9 280 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 SOCS3O14543 225 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 PDE6DO43924 150 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 IGLL1P15814 213 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 CSN1S1P47710 185 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 SNRPD3P62318 126 aaKnown RBP5.52□□□□□ -1.53
CD44-228ENST00000528455 NDUFA5Q16718 116 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 ZNF506Q5JVG8 444 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 CST9LP1Q5W188 147 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 Q8N1X5 172 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 GBGT1Q8N5D6 347 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 PCNPQ8WW12 178 aaKnown RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms