RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 J3KRW8 73 aa16.22■□□□□ 0.19
CPSF1-202ENST00000527827 CT45A10P0DMU9 189 aa16.22■□□□□ 0.19
CPSF1-202ENST00000527827 IGLC2P0DOY2 106 aa16.22■□□□□ 0.19
CPSF1-202ENST00000527827 C4orf46Q504U0 113 aa16.22■□□□□ 0.19
CPSF1-202ENST00000527827 Q6ZTI0 123 aa16.22■□□□□ 0.19
CPSF1-202ENST00000527827 SAT2Q96F10 170 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-202ENST00000527827 VSIG2Q96IQ7 327 aa16.22■□□□□ 0.19
CPSF1-202ENST00000527827 A0A096LPF7 62 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 TRAV12-3A0A0B4J271 114 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 H3BQ15 152 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 TSC22D2O75157 780 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 DAZ2Q13117 558 aaKnown RBP16.21■□□□□ 0.19
CPSF1-202ENST00000527827 OPCMLQ14982 345 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 Q6ZRN7 208 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-202ENST00000527827 MGST2Q99735 147 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 FLVCR2Q9UPI3 526 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 PXMP4Q9Y6I8 212 aa16.21■□□□□ 0.19
CPSF1-202ENST00000527827 NDUFB6O95139 128 aa16.2■□□□□ 0.18
CPSF1-202ENST00000527827 SCGB1D2O95969 90 aa16.2■□□□□ 0.18
CPSF1-202ENST00000527827 LINC00315P59091 139 aa16.2■□□□□ 0.18
CPSF1-202ENST00000527827 TAS2R30P59541 319 aa16.2■□□□□ 0.18
CPSF1-202ENST00000527827 ZNF431Q8TF32 576 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-202ENST00000527827 ODF3Q96PU9 254 aa16.2■□□□□ 0.18
CPSF1-202ENST00000527827 RCL1Q9Y2P8 373 aaKnown RBP16.2■□□□□ 0.18
CPSF1-202ENST00000527827 NPIPB6E9PJ23 425 aa16.19■□□□□ 0.18
CPSF1-202ENST00000527827 COX7A2P2O60397 106 aa16.19■□□□□ 0.18
CPSF1-202ENST00000527827 OR4E1P0C645 316 aa16.19■□□□□ 0.18
CPSF1-202ENST00000527827 PYGO2Q9BRQ0 406 aa16.19■□□□□ 0.18
CPSF1-202ENST00000527827 LEPP41159 167 aa16.18■□□□□ 0.18
CPSF1-202ENST00000527827 IAH1Q2TAA2 248 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-202ENST00000527827 C10orf113Q5VZT2 155 aa16.18■□□□□ 0.18
CPSF1-202ENST00000527827 GGACTQ9BVM4 153 aa16.18■□□□□ 0.18
CPSF1-202ENST00000527827 TRAV5A0A0B4J249 113 aa16.16■□□□□ 0.18
CPSF1-202ENST00000527827 C7orf66A4D0T2 115 aa16.16■□□□□ 0.18
CPSF1-202ENST00000527827 S100A5P33763 92 aa16.16■□□□□ 0.18
CPSF1-202ENST00000527827 C11orf72Q8NBR9 251 aa16.16■□□□□ 0.18
CPSF1-202ENST00000527827 C18orf15Q96N68 181 aa16.16■□□□□ 0.18
CPSF1-202ENST00000527827 SRRQ9GZT4 340 aa16.16■□□□□ 0.18
CPSF1-202ENST00000527827 GSN-AS1Q9NRJ2 163 aa16.16■□□□□ 0.18
CPSF1-202ENST00000527827 EPM2AB3EWF7 344 aa16.15■□□□□ 0.18
CPSF1-202ENST00000527827 DNAJC4Q9NNZ3 241 aa16.15■□□□□ 0.18
CPSF1-202ENST00000527827 GSKIPQ9P0R6 139 aa16.15■□□□□ 0.18
CPSF1-202ENST00000527827 TRGV2A0A075B6R0 118 aa16.14■□□□□ 0.17
CPSF1-202ENST00000527827 NAP1L6A6NFF2 107 aa16.14■□□□□ 0.17
CPSF1-202ENST00000527827 MBPP02686 304 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-202ENST00000527827 FUSP35637 526 aaKnown RBP eCLIP16.14■□□□□ 0.17
CPSF1-202ENST00000527827 SIVA1O15304 175 aa16.13■□□□□ 0.17
CPSF1-202ENST00000527827 CAMLGP49069 296 aa16.13■□□□□ 0.17
CPSF1-202ENST00000527827 BAK1Q16611 211 aa16.13■□□□□ 0.17
CPSF1-202ENST00000527827 GUK1Q16774 197 aa16.13■□□□□ 0.17
CPSF1-202ENST00000527827 C7orf71A4D174 169 aa16.12■□□□□ 0.17
CPSF1-202ENST00000527827 ZNF324O75467 553 aaPredicted RBP16.12■□□□□ 0.17
CPSF1-202ENST00000527827 SLC25A5P05141 298 aaKnown RBP16.12■□□□□ 0.17
CPSF1-202ENST00000527827 ERCC8Q13216 396 aa16.12■□□□□ 0.17
CPSF1-202ENST00000527827 MIC13Q5XKP0 118 aa16.12■□□□□ 0.17
CPSF1-202ENST00000527827 ZNF680Q8NEM1 530 aa16.12■□□□□ 0.17
CPSF1-202ENST00000527827 LINC00467Q9BRT7 94 aa16.12■□□□□ 0.17
CPSF1-202ENST00000527827 PGPEP1Q9NXJ5 209 aa16.12■□□□□ 0.17
CPSF1-202ENST00000527827 FUT9Q9Y231 359 aa16.12■□□□□ 0.17
CPSF1-202ENST00000527827 TRGV1A0A0A0MS02 117 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 M0R3E3 92 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 ZNF253O75346 499 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 BTCP35070 178 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 Q6ZRG5 221 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 NRARPQ7Z6K4 114 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 MITD1Q8WV92 249 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 FAM19A4Q96LR4 140 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 KLF12Q9Y4X4 402 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 TNFRSF18Q9Y5U5 241 aa16.11■□□□□ 0.17
CPSF1-202ENST00000527827 DMBT1Q9UGM3 2413 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-202ENST00000527827 KLLNB2CW77 178 aa16.1■□□□□ 0.17
CPSF1-202ENST00000527827 SPINK4O60575 86 aa16.1■□□□□ 0.17
CPSF1-202ENST00000527827 NXPH4O95158 308 aa16.1■□□□□ 0.17
CPSF1-202ENST00000527827 XGP55808 180 aa16.1■□□□□ 0.17
CPSF1-202ENST00000527827 CD300CQ08708 224 aa16.1■□□□□ 0.17
CPSF1-202ENST00000527827 ANXA2RQ3ZCQ2 193 aa16.1■□□□□ 0.17
CPSF1-202ENST00000527827 LYPD1Q8N2G4 141 aa16.1■□□□□ 0.17
CPSF1-202ENST00000527827 MRPL53Q96EL3 112 aaKnown RBP16.1■□□□□ 0.17
CPSF1-202ENST00000527827 INPP1P49441 399 aa16.09■□□□□ 0.17
CPSF1-202ENST00000527827 BTN1A1Q13410 526 aa16.09■□□□□ 0.17
CPSF1-202ENST00000527827 SPANXN2Q5MJ10 180 aa16.09■□□□□ 0.17
CPSF1-202ENST00000527827 EIF4E3Q8N5X7 224 aaKnown RBP16.09■□□□□ 0.17
CPSF1-202ENST00000527827 OR1L4Q8NGR5 311 aa16.09■□□□□ 0.17
CPSF1-202ENST00000527827 FAT1Q14517 4588 aa16.09■□□□□ 0.17
CPSF1-202ENST00000527827 TRBV19A0A075B6N1 114 aa16.08■□□□□ 0.16
CPSF1-202ENST00000527827 TCL1AP56279 114 aa16.08■□□□□ 0.16
CPSF1-202ENST00000527827 RAB31Q13636 194 aa16.08■□□□□ 0.16
CPSF1-202ENST00000527827 TRIQKQ629K1 86 aa16.08■□□□□ 0.16
CPSF1-202ENST00000527827 AGPAT4-IT1Q9H0P7 198 aa16.08■□□□□ 0.16
CPSF1-202ENST00000527827 WDR83OSQ9Y284 106 aa16.08■□□□□ 0.16
CPSF1-202ENST00000527827 L7N2F9 121 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 CCSO14618 274 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 PAX4O43316 350 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 NDUFB4O95168 129 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 INAFM2P0DMQ5 153 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 ERVFC1-1P60608 527 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 VAMP2P63027 116 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 LINC00477Q96M19 166 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 PFDN5Q99471 154 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 C11orf1Q9H5F2 150 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms