RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FAM231CP0DMU5 169 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 CRYGSP22914 178 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 CA6P23280 308 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 CD24P25063 80 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 PLNP26678 52 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 DUTP33316 252 aaKnown RBP4.59□□□□□ -1.67
CD44-225ENST00000527326 PLGLB1Q02325 96 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 MZT1Q08AG7 82 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 ZNF816Q0VGE8 651 aaPredicted RBP4.59□□□□□ -1.67
CD44-225ENST00000527326 RSPO1Q2MKA7 263 aaPredicted RBP4.59□□□□□ -1.67
CD44-225ENST00000527326 ZNF542PQ5EBM4 170 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 Q5XG85 94 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 ZFP2Q6ZN57 461 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 MED12LQ86YW9 2145 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 C8orf31Q8N9H6 132 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 MLST8Q9BVC4 326 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 C1orf43Q9BWL3 253 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 JPT2Q9H910 190 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 CALYQ9NYX4 217 aa4.59□□□□□ -1.67
CD44-225ENST00000527326 CACNA1GO43497 2377 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 CACNA1CQ13936 2221 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 K7EM74 188 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 ATOX1O00244 68 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 CXCL10P02778 98 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 ERVK-16P61578 105 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 IL11RAQ14626 422 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 ATXN8Q156A1 80 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 TMEM155Q4W5P6 130 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 DEFB121Q5J5C9 76 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 MAPKAPK5-AS1Q8N8E1 139 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 LINC00482Q8N8I6 264 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 NTN5Q8WTR8 489 aaPredicted RBP4.58□□□□□ -1.68
CD44-225ENST00000527326 LINC00477Q96M19 166 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 ZNF714Q96N38 554 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 PAXXQ9BUH6 204 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 ZNF256Q9Y2P7 627 aaPredicted RBP4.58□□□□□ -1.68
CD44-225ENST00000527326 LRRK1Q38SD2 2015 aa4.58□□□□□ -1.68
CD44-225ENST00000527326 TRGV11A0A075B6L2 103 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 TRBV10-2A0A0K0K1G8 114 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 A0A1W2PR77 199 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 D6R8Y8 96 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 NDUFC2-KCTD14E9PQ53 114 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 H3BT86 120 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 CDX4O14627 284 aaPredicted RBP4.57□□□□□ -1.68
CD44-225ENST00000527326 TIMM8AO60220 97 aaPredicted RBP4.57□□□□□ -1.68
CD44-225ENST00000527326 PRSS1P07477 247 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 FKBP2P26885 142 aaKnown RBP4.57□□□□□ -1.68
CD44-225ENST00000527326 MYCNOSP40205 109 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 LOXL1Q08397 574 aaPredicted RBP4.57□□□□□ -1.68
CD44-225ENST00000527326 ZNF56Q15929 161 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 C4orf26Q17RF5 130 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 SPINK9Q5DT21 86 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 NDUFA11Q86Y39 141 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 TMEM86BQ8N661 226 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 ITLN1Q8WWA0 313 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 NABP1Q96AH0 204 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 PLEKHB2Q96CS7 222 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 FAM167A-AS1Q96KT0 104 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 FOXC2Q99958 501 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 FAM173AQ9BQD7 235 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 TTTY13Q9BZ97 58 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 PLA2G2FQ9BZM2 168 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 NXT2Q9NPJ8 142 aaKnown RBP4.57□□□□□ -1.68
CD44-225ENST00000527326 OCIAD1Q9NX40 245 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 FOXA2Q9Y261 457 aaPredicted RBP4.57□□□□□ -1.68
CD44-225ENST00000527326 SHANK1Q9Y566 2161 aa4.57□□□□□ -1.68
CD44-225ENST00000527326 EXPH5Q8NEV8 1989 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 LOC389332A0A1B0GUA5 103 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 LINC01548A6NM66 108 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 ZNF785A8K8V0 405 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 C17orf98A8MV24 154 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 TMEM150CB9EJG8 249 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 H0YIG0 161 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 K7EMI3 77 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 KLRB1Q12918 225 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 KHDC1LQ5JSQ8 128 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 FAM27BQ5VT28 67 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 FAM104BQ5XKR9 115 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 GOLT1AQ6ZVE7 132 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 FAM90A1Q86YD7 464 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 RTL8AQ9BWD3 113 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 SLC25A39Q9BZJ4 359 aaPredicted RBP4.56□□□□□ -1.68
CD44-225ENST00000527326 PYGO1Q9Y3Y4 419 aa4.56□□□□□ -1.68
CD44-225ENST00000527326 PRRC2BQ5JSZ5 2229 aaKnown RBP4.56□□□□□ -1.68
CD44-225ENST00000527326 HCFC1P51610 2035 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 PCDH15Q96QU1 1955 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 SCN10AQ9Y5Y9 1956 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 TRAV13-1A0A0B4J241 112 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 TRAV12-1A0A0B4J245 112 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 TRAV17A0A0B4J275 112 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 A0A1W2PPC4 97 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 HSPB6O14558 160 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 IGKV3-11P04433 115 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 ARMS2P0C7Q2 107 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 RPL35AP18077 110 aaKnown RBP4.55□□□□□ -1.68
CD44-225ENST00000527326 PSMB8P28062 276 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 EFNA4P52798 201 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 SRSF9Q13242 221 aaKnown RBP eCLIP4.55□□□□□ -1.68
CD44-225ENST00000527326 LINC01620Q4KN68 170 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 C6orf226Q5I0X4 101 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms