RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 ZHX1-C8orf76Q96EF9 292 aa-4.23□□□□□ -3.09
RNU6-539P-201ENST00000516665 AP1S3Q96PC3 154 aa-4.23□□□□□ -3.09
RNU6-539P-201ENST00000516665 YPEL2Q96QA6 119 aa-4.23□□□□□ -3.09
RNU6-539P-201ENST00000516665 BPIFA3Q9BQP9 254 aa-4.23□□□□□ -3.09
RNU6-539P-201ENST00000516665 CCDC90BQ9GZT6 254 aa-4.23□□□□□ -3.09
RNU6-539P-201ENST00000516665 MS4A6AQ9H2W1 248 aa-4.23□□□□□ -3.09
RNU6-539P-201ENST00000516665 KDM5AP29375 1690 aaKnown RBP-4.23□□□□□ -3.09
RNU6-539P-201ENST00000516665 COL14A1Q05707 1796 aaKnown RBP-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 TRBV7-1A0A0A6YYK4 115 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 GOLGA8QA0A0J9YX86 632 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 TEX50A0A1B0GTY4 177 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 GOLGA8OA6NCC3 632 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 GOLGA8NF8WBI6 632 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 M0R2P5 195 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 NEMFO60524 1076 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 IFNA10P01566 189 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 ISG15P05161 165 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 CCKP06307 115 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 S100A4P26447 101 aaKnown RBP-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 RPL5P46777 297 aaKnown RBP-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 YPEL3P61236 119 aaPredicted RBP-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 ERVS71-1P61550 626 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 CAVIN4Q5BKX8 364 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 MT1MQ8N339 61 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 CNBD2Q96M20 576 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 TMEM126AQ9H061 195 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 FAM135BQ49AJ0 1406 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 FMN1Q68DA7 1419 aa-4.24□□□□□ -3.09
RNU6-539P-201ENST00000516665 hDV103S1A0JD37 113 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 C9orf92A6NGG3 77 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 DIAPH2-AS1Q14236 149 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 COMMD7Q86VX2 200 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 LINC00269Q8N2A0 174 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 PPP1R1CQ8WVI7 109 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 DGCR14Q96DF8 476 aaKnown RBP-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 NSD3Q9BZ95 1437 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 CST11Q9H112 138 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 C11orf68Q9H3H3 251 aaKnown RBP-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 HECW1Q76N89 1606 aa-4.25□□□□□ -3.09
RNU6-539P-201ENST00000516665 DNAH10Q8IVF4 4471 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 ERCC6L2Q5T890 1561 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 ANKRD50Q9ULJ7 1429 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 IGKCP01834 107 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 SPOPLQ6IQ16 392 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 LYPD5Q6UWN5 251 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 C3orf62Q6ZUJ4 267 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 HIST2H3AQ71DI3 136 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 LRRC25Q8N386 305 aaPredicted RBP-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 TSEN15Q8WW01 171 aaKnown RBP-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 TOMM6Q96B49 74 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 DMAC1Q96GE9 116 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 OR4C12Q96R67 309 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 AP1M2Q9Y6Q5 423 aa-4.26□□□□□ -3.09
RNU6-539P-201ENST00000516665 TLN2Q9Y4G6 2542 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 BPTFQ12830 3046 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 ZNF670-ZNF695F2Z2N8 137 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 LIN7AO14910 233 aaPredicted RBP-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 TPST1O60507 370 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 WBP4O75554 376 aaKnown RBP-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 HNMTP50135 292 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 RAB8AP61006 207 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 SPANXN2Q5MJ10 180 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 OR5D16Q8NGK9 328 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 CERS2Q96G23 380 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 DHRS9Q9BPW9 319 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 FBXL12Q9NXK8 326 aa-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 LRPPRCP42704 1394 aaKnown RBP-4.27□□□□□ -3.09
RNU6-539P-201ENST00000516665 DOCK5Q9H7D0 1870 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 ARAP1Q96P48 1450 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 KNDC1Q76NI1 1749 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 TEX49A0A1B0GTD5 131 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 C1orf196B1AJZ1 125 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 DISC1C4P0D8 188 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 NDUFB3O43676 98 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 NOL3O60936 208 aaKnown RBP-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 ADAP1O75689 374 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 BRI3O95415 125 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 BAG2O95816 211 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 MT1EP04732 61 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 LIMS3P0CW19 117 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 LIMS4P0CW20 117 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 MARCKSL1P49006 195 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 ATP5IP56385 69 aaPredicted RBP-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 POLR2FP61218 127 aaKnown RBP-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 RHOBP62745 196 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 MRPL52Q86TS9 123 aaKnown RBP-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 ARHGAP18Q8N392 663 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 DEFB123Q8N688 67 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 SLC25A40Q8TBP6 338 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 TIPINQ9BVW5 301 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 UPF3BQ9BZI7 483 aaKnown RBP-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 OR52A5Q9H2C5 316 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 SCN3BQ9NY72 215 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 APLNQ9ULZ1 77 aa-4.28□□□□□ -3.09
RNU6-539P-201ENST00000516665 LOC107986453A0A1B0GWG9 222 aa-4.29□□□□□ -3.1
RNU6-539P-201ENST00000516665 TMEM30CPA0ZSE6 113 aa-4.29□□□□□ -3.1
RNU6-539P-201ENST00000516665 RBAKDNA6NC62 111 aa-4.29□□□□□ -3.1
RNU6-539P-201ENST00000516665 MT2AP02795 61 aa-4.29□□□□□ -3.1
RNU6-539P-201ENST00000516665 DDTP30046 118 aa-4.29□□□□□ -3.1
RNU6-539P-201ENST00000516665 AKIRIN2Q53H80 203 aa-4.29□□□□□ -3.1
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms