RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 HTN1P15515 57 aa12.34□□□□□ -0.43
DDX41-217ENST00000515562 TMEM263Q8WUH6 116 aaKnown RBP12.34□□□□□ -0.43
DDX41-217ENST00000515562 CHAC2Q8WUX2 184 aa12.34□□□□□ -0.43
DDX41-217ENST00000515562 SAT2Q96F10 170 aaPredicted RBP12.34□□□□□ -0.43
DDX41-217ENST00000515562 SLC39A9Q9NUM3 307 aa12.34□□□□□ -0.43
DDX41-217ENST00000515562 TIMM8BQ9Y5J9 83 aaPredicted RBP12.34□□□□□ -0.43
DDX41-217ENST00000515562 MPDU1O75352 247 aa12.33□□□□□ -0.44
DDX41-217ENST00000515562 ATP5G1P05496 136 aa12.33□□□□□ -0.44
DDX41-217ENST00000515562 PRB4P10163 310 aaPredicted RBP12.33□□□□□ -0.44
DDX41-217ENST00000515562 ATP5G3P48201 142 aa12.33□□□□□ -0.44
DDX41-217ENST00000515562 FAM3BP58499 235 aaPredicted RBP12.33□□□□□ -0.44
DDX41-217ENST00000515562 ATP6V1FQ16864 119 aa12.33□□□□□ -0.44
DDX41-217ENST00000515562 ENKURQ8TC29 256 aa12.33□□□□□ -0.44
DDX41-217ENST00000515562 RNASE8Q8TDE3 154 aaKnown RBP12.33□□□□□ -0.44
DDX41-217ENST00000515562 ODF3Q96PU9 254 aa12.33□□□□□ -0.44
DDX41-217ENST00000515562 GPN1Q9HCN4 374 aaPredicted RBP12.33□□□□□ -0.44
DDX41-217ENST00000515562 IGLV2-18A0A075B6J9 118 aa12.32□□□□□ -0.44
DDX41-217ENST00000515562 CBY3A6NI87 242 aa12.32□□□□□ -0.44
DDX41-217ENST00000515562 PRAC2D3DTV9 90 aa12.32□□□□□ -0.44
DDX41-217ENST00000515562 F5H768 121 aa12.32□□□□□ -0.44
DDX41-217ENST00000515562 FGF7P21781 194 aa12.32□□□□□ -0.44
DDX41-217ENST00000515562 KRTAP17-1Q9BYP8 105 aa12.32□□□□□ -0.44
DDX41-217ENST00000515562 FAT2Q9NYQ8 4349 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 TRAV5A0A0B4J249 113 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 PRSS29PA6NIE9 313 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 RTL8CO15255 209 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 LEPP41159 167 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 GFI1BQ5VTD9 330 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 Q6ZR54 194 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 MRPL53Q96EL3 112 aaKnown RBP12.31□□□□□ -0.44
DDX41-217ENST00000515562 ZNF586Q9NXT0 402 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 TMEM14CQ9P0S9 112 aa12.31□□□□□ -0.44
DDX41-217ENST00000515562 DNAH2Q9P225 4427 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 A0A1B0GVY2 172 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 NPIPB6E9PJ23 425 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 PDE6HQ13956 83 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 FCN2Q15485 313 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 SOHLH1Q5JUK2 328 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 CCDC28AQ8IWP9 274 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 ATG101Q9BSB4 218 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 NPCDR1Q9BY65 106 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 PARD6GQ9BYG4 376 aaPredicted RBP12.3□□□□□ -0.44
DDX41-217ENST00000515562 HERC2O95714 4834 aa12.3□□□□□ -0.44
DDX41-217ENST00000515562 TRBV19A0A075B6N1 114 aa12.29□□□□□ -0.44
DDX41-217ENST00000515562 UPK1BO75841 260 aa12.29□□□□□ -0.44
DDX41-217ENST00000515562 RLN2P04090 185 aa12.29□□□□□ -0.44
DDX41-217ENST00000515562 KIR3DS1Q14943 382 aa12.29□□□□□ -0.44
DDX41-217ENST00000515562 SLC25A31Q9H0C2 315 aa12.29□□□□□ -0.44
DDX41-217ENST00000515562 NOP10Q9NPE3 64 aaKnown RBP12.29□□□□□ -0.44
DDX41-217ENST00000515562 NACAE9PAV3 2078 aa12.29□□□□□ -0.44
DDX41-217ENST00000515562 PRAF2O60831 178 aa12.28□□□□□ -0.44
DDX41-217ENST00000515562 CT45A10P0DMU9 189 aa12.28□□□□□ -0.44
DDX41-217ENST00000515562 HIST1H1EP10412 219 aaKnown RBP12.28□□□□□ -0.44
DDX41-217ENST00000515562 NMES1Q9C002 83 aa12.28□□□□□ -0.44
DDX41-217ENST00000515562 KCNIP2Q9NS61 270 aa12.28□□□□□ -0.44
DDX41-217ENST00000515562 PRELID1Q9Y255 219 aa12.28□□□□□ -0.44
DDX41-217ENST00000515562 E5RGE8 158 aa12.27□□□□□ -0.45
DDX41-217ENST00000515562 NUDT3O95989 172 aa12.27□□□□□ -0.45
DDX41-217ENST00000515562 OR5C1Q8NGR4 320 aa12.27□□□□□ -0.45
DDX41-217ENST00000515562 PYGO2Q9BRQ0 406 aa12.27□□□□□ -0.45
DDX41-217ENST00000515562 TIMM9Q9Y5J7 89 aa12.27□□□□□ -0.45
DDX41-217ENST00000515562 SNURFLB1AK76 121 aa12.26□□□□□ -0.45
DDX41-217ENST00000515562 J3KRW8 73 aa12.26□□□□□ -0.45
DDX41-217ENST00000515562 CYCSP99999 105 aaKnown RBP12.26□□□□□ -0.45
DDX41-217ENST00000515562 NHLH2Q02577 135 aa12.26□□□□□ -0.45
DDX41-217ENST00000515562 LINC00612Q8N6U2 182 aa12.26□□□□□ -0.45
DDX41-217ENST00000515562 THAP6Q8TBB0 222 aa12.26□□□□□ -0.45
DDX41-217ENST00000515562 AAMDCQ9H7C9 122 aa12.26□□□□□ -0.45
DDX41-217ENST00000515562 DNAH17Q9UFH2 4485 aa12.26□□□□□ -0.45
DDX41-217ENST00000515562 TRAV12-3A0A0B4J271 114 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 M0R3E3 92 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 NDUFB4O95168 129 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 SIX6O95475 246 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 SLC25A5P05141 298 aaKnown RBP12.25□□□□□ -0.45
DDX41-217ENST00000515562 PYYP10082 97 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 CCL18P55774 89 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 LRRC37A5PQ49AS3 106 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 C1orf134Q5TEV5 83 aa12.25□□□□□ -0.45
DDX41-217ENST00000515562 PKHD1P08F94 4074 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 CLINT1Q14677 625 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 KIAA1109Q2LD37 5005 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 GCSAMLQ5JQS6 135 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 BLNKQ8WV28 456 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 RNF141Q8WVD5 230 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 LINC00477Q96M19 166 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 SLC25A2Q9BXI2 301 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 PTTG2Q9NZH5 202 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 OR5AC2Q9NZP5 309 aa12.24□□□□□ -0.45
DDX41-217ENST00000515562 C7orf71A4D174 169 aa12.23□□□□□ -0.45
DDX41-217ENST00000515562 KLLNB2CW77 178 aa12.23□□□□□ -0.45
DDX41-217ENST00000515562 INMT-MINDY4F8WBC2 141 aa12.23□□□□□ -0.45
DDX41-217ENST00000515562 M6PRP20645 277 aa12.23□□□□□ -0.45
DDX41-217ENST00000515562 ZNF680Q8NEM1 530 aa12.23□□□□□ -0.45
DDX41-217ENST00000515562 ZNRF2Q8NHG8 242 aa12.23□□□□□ -0.45
DDX41-217ENST00000515562 MRPL32Q9BYC8 188 aaKnown RBP12.23□□□□□ -0.45
DDX41-217ENST00000515562 C17orf112F2Z3M2 114 aa12.22□□□□□ -0.45
DDX41-217ENST00000515562 PET100P0DJ07 73 aa12.22□□□□□ -0.45
DDX41-217ENST00000515562 DAZ2Q13117 558 aaKnown RBP12.22□□□□□ -0.45
DDX41-217ENST00000515562 ERCC8Q13216 396 aa12.22□□□□□ -0.45
DDX41-217ENST00000515562 EXOC3-AS1Q8N2X6 119 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms