RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ZNF876PQ49A33 203 aa7.15□□□□□ -1.27
LIMCH1-218ENST00000513024 FAM104BQ5XKR9 115 aa7.15□□□□□ -1.27
LIMCH1-218ENST00000513024 PI4KAP42356 2102 aa7.15□□□□□ -1.27
LIMCH1-218ENST00000513024 THBDP07204 575 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 CECR9P0C854 216 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 GATA3P23771 443 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 PRB3Q04118 309 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 LYZL4Q96KX0 146 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 DSCR8Q96T75 97 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 TRGV2A0A075B6R0 118 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 IGHG2P01859 326 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 MYOD1P15172 320 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 HOXD3P31249 432 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 YPEL3P61236 119 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 C6orf226Q5I0X4 101 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 C1orf195Q5TG92 126 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 ABCA4P78363 2273 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 TINCRA0A1B0GVN0 87 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 TRGV3P03979 118 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 ATP5G1P05496 136 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 PVRIGQ6DKI7 326 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 C9JQL5 133 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 FOXG1P55316 489 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 LHFPL1Q86WI0 220 aa7.14□□□□□ -1.27
LIMCH1-218ENST00000513024 TAX1BP3O14907 124 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 IGKV1D-33P01593 117 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 IGKV1-33P01594 117 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 CCL3L1P16619 93 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 PSMB8P28062 276 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 GLMPQ8WWB7 406 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 SAA2-SAA4A0A096LPE2 208 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 F5H768 121 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 LYPD3O95274 346 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 IGLC1P0CG04 106 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 SAA2P0DJI9 122 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 RNASE2P10153 161 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 KLF5Q13887 457 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 SPATA31B1PQ5VZV4 182 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 FOXI2Q6ZQN5 318 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 ALPK3Q96L96 1907 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 C15orf61A6NNL5 157 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 CELA3BP08861 270 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 TREML4Q6UXN2 200 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 LINC01356Q8N9X3 169 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 RNF125Q96EQ8 232 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 LINC01587Q99440 93 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 CHCHD5Q9BSY4 110 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 DPM3Q9P2X0 92 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 A0A0B4J2C4 111 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 NMSQ5H8A3 153 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 MUSTN1Q8IVN3 82 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 ZMAT4Q9H898 229 aa7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 MRPS18CQ9Y3D5 142 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-218ENST00000513024 ZNF407Q9C0G0 2248 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 IGKV1-12A0A0C4DH73 117 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 IGKV1D-12P01611 117 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 FOXI1Q12951 378 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 CLEC19AQ6UXS0 136 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 DOCK11Q5JSL3 2073 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 LRRK1Q38SD2 2015 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 MST1LQ2TV78 715 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 ANKRD39Q53RE8 183 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 CDPF1Q6NVV7 123 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 FAM90A1Q86YD7 464 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 DEFB104AQ8WTQ1 72 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 GFRA4Q9GZZ7 299 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 CFC1BP0CG36 223 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 CFC1P0CG37 223 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 FAM27E3Q08E93 113 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 WFDC2Q14508 124 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 NSUN5P1Q3KNT7 163 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 LYPD6BQ8NI32 183 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 CRLF1O75462 422 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 C10orf91Q5T1B1 145 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 C5orf24Q7Z6I8 188 aa7.12□□□□□ -1.27
LIMCH1-218ENST00000513024 SHISA9B4DS77 424 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 CD24P25063 80 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 MED13LQ71F56 2210 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 MORN2Q502X0 79 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 RNF166Q96A37 237 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 FER1L5A0AVI2 2057 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 TRGV11A0A075B6L2 103 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 IGLL5B9A064 214 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 BSPH1Q075Z2 132 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 ZNF497Q6ZNH5 498 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 PRSS33Q8NF86 280 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 PLXND1Q9Y4D7 1925 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 TM4SF5O14894 197 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 IGHV3-11P01762 117 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 ZIC4Q8N9L1 334 aa7.11□□□□□ -1.27
LIMCH1-218ENST00000513024 LAMA3Q16787 3333 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 SMKR1H3BMG3 65 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 UQCRQO14949 82 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 LINC00271P0C7V0 271 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 SPSB3Q6PJ21 355 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 PLXNB3Q9ULL4 1909 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 YPEL1O60688 119 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 BAALC-AS2P0C853 105 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 ZFP36L1Q07352 338 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 C10orf55Q5SWW7 151 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms