RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KLRB1Q12918 225 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 ERCC8Q13216 396 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 GLMPQ8WWB7 406 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 SIGLEC8Q9NYZ4 499 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 CTSZQ9UBR2 303 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 C22orf46C9J442 243 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 E7EUB6 86 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 MRPL51Q4U2R6 128 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 ORMDL2Q53FV1 153 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 PRR14LQ5THK1 2151 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 PRSS2P07478 247 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 IGFL2Q6UWQ7 119 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF562Q6V9R5 426 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF418Q8TF45 676 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 DPF1Q92782 380 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 CHTOPQ9Y3Y2 248 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 TRAV21A0A0B4J279 112 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 TNFRSF6BO95407 300 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 SAMD13Q5VXD3 122 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 CLEC2AQ6UVW9 174 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 SFTA2Q6UW10 78 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 C1orf229Q6ZS94 237 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 C8orf31Q8N9H6 132 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 RITA1Q96K30 269 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 LINC00527Q9UJ94 153 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 TP53TG3Q9ULZ0 132 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 ABCA4P78363 2273 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 M0R1W7 72 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 NDUFB8O95169 186 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 GP9P14770 177 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 MRPL36Q9P0J6 103 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 OOSP1A8MZH6 123 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 IGLV2-8P01709 118 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 PRR25Q96S07 402 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF747Q9BV97 191 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 KAAG1Q9UBP8 84 aa6.69□□□□□ -1.34
LIMCH1-216ENST00000512820 PLCE1Q9P212 2302 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 CGB3P0DN86 165 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 CGB7P0DN87 165 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 PRTN3P24158 256 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 MINOS1Q5TGZ0 78 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 SIGLEC15Q6ZMC9 328 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 GTSF1Q8WW33 167 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 MINOS1-NBL1R4GNA1 71 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 H3BRM9 83 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 PAX8Q06710 450 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 LGALS9BQ3B8N2 356 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 LGALS9CQ6DKI2 356 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 SEM1Q6ZVN7 128 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF491Q8N8L2 437 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 K7EM74 188 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 FAM120AOSQ5T036 256 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 PRSS57Q6UWY2 283 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 CHAC1Q9BUX1 264 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 KMT2EQ8IZD2 1858 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 MED13LQ71F56 2210 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 PAX1P15863 534 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 JMJD8Q96S16 334 aa6.68□□□□□ -1.34
LIMCH1-216ENST00000512820 C9orf118A6NHY6 69 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF815PA8K554 130 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 HOXA3O43365 443 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 NPYP01303 97 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 NDPQ00604 133 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 PIMREGQ9BSJ6 248 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 KLF12Q9Y4X4 402 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 CEACAM4O75871 244 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 PRR30Q53SZ7 412 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 DEFB125Q8N687 156 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 RNF182Q8N6D2 247 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 CYSLTR1Q9Y271 337 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 TRAV40A0A0B4J280 105 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 INS-IGF2F8WCM5 200 aa6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 SNRPD3P62318 126 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF256Q9Y2P7 627 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-216ENST00000512820 CPAMD8Q8IZJ3 1885 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 IGHV2-70DA0A0C4DH43 119 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 TGFAP01135 160 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 IGLV2-23P01705 113 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 GAGE13Q4V321 117 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 SIGMAR1Q99720 223 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 BEX4Q9NWD9 120 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 TNCP24821 2201 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 COX6CP09669 75 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 CD300EQ496F6 205 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 TRAV41A0A0B4J266 112 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 A0A1B0GV72 72 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 NPIPB6E9PJ23 425 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 OVOL1O14753 267 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 IGKV1-17P01599 117 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 PLNP26678 52 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 PAPPA-AS1Q5QFB9 102 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 TMEM219Q86XT9 240 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 Q8N7P7 452 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 PRSS33Q8NF86 280 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 SPTAN1Q13813 2472 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 TMEM8BA6NDV4 472 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 CD7P09564 240 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 VGLL1Q99990 258 aa6.66□□□□□ -1.34
LIMCH1-216ENST00000512820 H7C1H1 209 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 ATP5J2P56134 94 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms