RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 COL6A3P12111 3177 aa2.41□□□□□ -2.02
NUP54-209ENST00000510569 PLXNA2O75051 1894 aa2.41□□□□□ -2.02
NUP54-209ENST00000510569 CABIN1Q9Y6J0 2220 aa2.41□□□□□ -2.02
NUP54-209ENST00000510569 DSPPQ9NZW4 1301 aa2.41□□□□□ -2.02
NUP54-209ENST00000510569 LAMA2P24043 3122 aaKnown RBP2.4□□□□□ -2.02
NUP54-209ENST00000510569 UNC80Q8N2C7 3258 aa2.4□□□□□ -2.02
NUP54-209ENST00000510569 PRUNE2Q8WUY3 3088 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 IGHV1-45A0A0A0MS14 117 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 IGHV3-74A0A0B4J1X5 117 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 IGHV1-58A0A0C4DH39 117 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 A0A0G2JMM0 328 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 A0A1W2PP18 115 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 A0A1W2PPB8 328 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 KIR3DP1A8MWS1 328 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 NDUFC2-KCTD14E9PQ53 114 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 TAX1BP3O14907 124 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 MRPS14O60783 128 aaKnown RBP2.4□□□□□ -2.03
NUP54-209ENST00000510569 CST7O76096 145 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 MPC2O95563 127 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 KRASP01116 189 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 SRP19P09132 144 aaKnown RBP2.4□□□□□ -2.03
NUP54-209ENST00000510569 CD7P09564 240 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 CCL5P13501 91 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 CRISP2P16562 243 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 NFYBP25208 207 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 TGFBR1P36897 503 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 ETV6P41212 452 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 FOXA1P55317 472 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 S100A10P60903 97 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 TMEM258P61165 79 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 QRFPP83859 136 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 TMEM183BQ1AE95 376 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 MEIG1Q5JSS6 88 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 GUSBP11Q6P575 273 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 RPS19BP1Q86WX3 136 aaKnown RBP2.4□□□□□ -2.03
NUP54-209ENST00000510569 RPP25LQ8N5L8 163 aaKnown RBP2.4□□□□□ -2.03
NUP54-209ENST00000510569 FER1L6-AS1Q8NA97 138 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 C5orf17Q8NAS9 161 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 OR5D14Q8NGL3 314 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 OR5H2Q8NGV7 314 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 RAB2BQ8WUD1 216 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 H1FXQ92522 213 aaKnown RBP2.4□□□□□ -2.03
NUP54-209ENST00000510569 POP5Q969H6 163 aaKnown RBP2.4□□□□□ -2.03
NUP54-209ENST00000510569 SLC25A46Q96AG3 418 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 DERL1Q9BUN8 251 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 DUSP21Q9H596 190 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 ZNF835Q9Y2P0 537 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 Q9Y3F1 56 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 REV3LO60673 3130 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 TRANK1O15050 2925 aa2.4□□□□□ -2.03
NUP54-209ENST00000510569 COL4A2P08572 1712 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HELZP42694 1942 aaKnown RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 OTOGLQ3ZCN5 2332 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 CHD9Q3L8U1 2897 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 MDC1Q14676 2089 aaKnown RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 TRAV27A0A087WT01 109 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 CXorf51AA0A1B0GTR3 108 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 A0A1B0GW54 56 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 PLA2G10O15496 165 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 OR2T1O43869 369 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 IGKV1-5P01602 117 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 ZNF705DP0CH99 300 aaPredicted RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 LGALS3P17931 250 aaKnown RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST1H2BOP23527 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST1H2BBP33778 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 ZNF93P35789 620 aaPredicted RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST1H2BDP58876 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 FGF12P61328 243 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST1H2BCP62807 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST2H2BEQ16778 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 LINC00483Q53H64 154 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 AMTNQ6UX39 209 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 RPS27LQ71UM5 84 aaKnown RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 GPHB5Q86YW7 130 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 TTC9CQ8N5M4 171 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 NPBQ8NG41 125 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 BRK1Q8WUW1 75 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST1H2BHQ93079 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST1H2BNQ99877 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 HIST1H2BMQ99879 126 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 MIEN1Q9BRT3 115 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 BANF2Q9H503 90 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 CA10Q9NS85 328 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 EYSQ5T1H1 3165 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 TET1Q8NFU7 2136 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 CHD7Q9P2D1 2997 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 SPTBN5Q9NRC6 3674 aaKnown RBP2.39□□□□□ -2.03
NUP54-209ENST00000510569 CCDC88CQ9P219 2028 aa2.39□□□□□ -2.03
NUP54-209ENST00000510569 IGKV1D-43A0A0B4J1Z2 117 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 FAM236AA0A1B0GUQ0 79 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 FAM236BA0A1B0GV22 79 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 OR2T8A6NH00 312 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 CCDC179H3BU77 68 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 M0R378 163 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 NDUFB2O95178 105 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 CD14P08571 375 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 TRAPPC2P0DI81 140 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 TRAPPC2BP0DI82 140 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 FABP2P12104 132 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms