RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 SMAD5-AS1Q9Y6J3 95 aa7.19□□□□□ -1.26
PDGFRA-208ENST00000509490 UFSP1Q6NVU6 142 aa7.19□□□□□ -1.26
PDGFRA-208ENST00000509490 RABAC1Q9UI14 185 aa7.19□□□□□ -1.26
PDGFRA-208ENST00000509490 M0R3E3 92 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 CTSGP08311 255 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 APELAP0DMC3 54 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 EGR2P11161 476 aaPredicted RBP7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 NBL1P41271 181 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 HSD52Q0P140 79 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 Q6ZVH6 145 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 RNF185Q96GF1 192 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 HIF1ANQ9NWT6 349 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 HIGD1BQ9P298 99 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 TCF15Q12870 199 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 KLF17Q5JT82 389 aaPredicted RBP7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 FER1L6-AS1Q8NA97 138 aa7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 COL25A1Q9BXS0 654 aaPredicted RBP7.18□□□□□ -1.26
PDGFRA-208ENST00000509490 IGHV4-4A0A075B6R2 117 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 VAMP3Q15836 100 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 OXLD1Q5BKU9 147 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 ADAMTSL5Q6ZMM2 481 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 FAM110DQ8TAY7 271 aaPredicted RBP7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 CBY3A6NI87 242 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 K7ENP7 123 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 NDPQ00604 133 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 LOXL1Q08397 574 aaPredicted RBP7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 AMN1Q8IY45 258 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 TIMD4Q96H15 378 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 ONECUT1Q9UBC0 465 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 SMPXQ9UHP9 88 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 PLXNB1O43157 2135 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 DSPP15924 2871 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 ZGRF1Q86YA3 2104 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 TMEM213A2RRL7 107 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 DLX1P56177 255 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 IFI27L1Q96BM0 104 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 ZFAND3Q9H8U3 227 aa7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 NXT2Q9NPJ8 142 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-208ENST00000509490 CELSR3Q9NYQ7 3312 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 OR2T8A6NH00 312 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 C9orf118A6NHY6 69 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 CSN3P07498 182 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 FAM106CPP0CH98 169 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 FAM106AQ4KMX7 169 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 ZNF502Q8TBZ5 544 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 SLC50A1Q9BRV3 221 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 TP73-AS1Q9UF72 201 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 MUC3AQ02505 3323 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 A6NDN8 102 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 FABP5P3A8MUU1 101 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 LYNX1G3V0Z9 82 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 NDUFS7O75251 213 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 LYNX1P0DP58 116 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 FCER1GP30273 86 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 ZNF80P51504 273 aaPredicted RBP7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 IL17RELQ6ZVW7 336 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 DTX2Q86UW9 622 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 BCL6BQ8N143 479 aaPredicted RBP7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 CST9LQ9H4G1 147 aa7.16□□□□□ -1.26
PDGFRA-208ENST00000509490 IGLV2-18A0A075B6J9 118 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 IGHV7-81A0A0B4J1V7 117 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 NPYP01303 97 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 OCIAD2Q56VL3 154 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 ASCL2Q99929 193 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 U3KQE9 123 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 NBEAQ8NFP9 2946 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 COL6A3P12111 3177 aa7.15□□□□□ -1.26
PDGFRA-208ENST00000509490 C7orf71A4D174 169 aa7.15□□□□□ -1.27
PDGFRA-208ENST00000509490 A4D1N5 150 aa7.15□□□□□ -1.27
PDGFRA-208ENST00000509490 EVI2AP22794 236 aa7.15□□□□□ -1.27
PDGFRA-208ENST00000509490 SRSF1Q07955 248 aaKnown RBP eCLIP7.15□□□□□ -1.27
PDGFRA-208ENST00000509490 PRR31Q5SQ13 230 aa7.15□□□□□ -1.27
PDGFRA-208ENST00000509490 VMO1Q7Z5L0 202 aa7.15□□□□□ -1.27
PDGFRA-208ENST00000509490 MAP1LC3AQ9H492 121 aa7.15□□□□□ -1.27
PDGFRA-208ENST00000509490 IGKV2-40A0A087WW87 121 aaPredicted RBP7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 TRAV8-6A0A0B4J262 113 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 A1L4Q6 167 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 BUB3O43684 328 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 IGKV2D-40P01614 121 aaPredicted RBP7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 CKS2P33552 79 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 COTL1Q14019 142 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 AMMECR1LQ6DCA0 310 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 Q8N9W7 124 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 SIRPDQ9H106 197 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 WDFY4Q6ZS81 3184 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 URB1O60287 2271 aaKnown RBP7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 BRI3O95415 125 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 CRIP2P52943 208 aaPredicted RBP7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 AJUBAQ96IF1 538 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 LENEPQ9Y5L5 61 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 ICE1Q9Y2F5 2266 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 SVILO95425 2214 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 LINC01619G3V211 115 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 ATP5LO75964 103 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 CACNG7P62955 275 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 PRR30Q53SZ7 412 aaPredicted RBP7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 Q8N8P6 123 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 VGLL1Q99990 258 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 HHLA3Q9XRX5 114 aa7.14□□□□□ -1.27
PDGFRA-208ENST00000509490 SNAI2O43623 268 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms