RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SGPP2Q8IWX5 399 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TMEM256Q8N2U0 113 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 EXOC3-AS1Q8N2X6 119 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 ANKRD29Q8N6D5 301 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 SGMS2Q8NHU3 365 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 SLC25A44Q96H78 314 aaPredicted RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 FMC1Q96HJ9 113 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PRELID3AQ96N28 172 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FOXC2Q99958 501 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 C20orf78Q9BR46 151 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 EMC6Q9BV81 110 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TMEM147Q9BVK8 224 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 CST11Q9H112 138 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PLEKHF2Q9H8W4 249 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 REEP1Q9H902 201 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 KCNIP2Q9NS61 270 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TVP23BQ9NYZ1 205 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRAPPC1Q9Y5R8 145 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 DNAJC15Q9Y5T4 150 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 MIA3Q5JRA6 1907 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TOGARAM1Q9Y4F4 1720 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 KIDINS220Q9ULH0 1771 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 KCPQ6ZWJ8 1503 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 NYNRINQ9P2P1 1898 aaKnown RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRBV19A0A075B6N1 114 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRBV20-1A0A075B6N2 111 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 hCG_1818297A0A087WSY0 165 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 IGKV1D-8A0A087WSZ0 117 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRAV27A0A087WT01 109 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRAV13-1A0A0B4J241 112 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRAV4A0A0B4J268 109 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRBV7-6A0A0J9YX20 115 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TRBV7-7A0A0K0K1E9 115 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FAM240AA0A1B0GVK7 77 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 A8MT66 165 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 ZNF736B4DX44 427 aaPredicted RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 MRPS12O15235 138 aaKnown RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 SSSCA1O60232 199 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 IGHV3-7P01780 117 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FGF1P05230 155 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 C3orf79P0CE67 100 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PYYP10082 97 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 COX8AP10176 69 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 COX7CP15954 63 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 HLA-DMBP28068 263 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PPP1CCP36873 323 aaKnown RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 MPV17P39210 176 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 UBE2E1P51965 193 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 APOC4P55056 127 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PPP1CAP62136 330 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 MRPS36P82909 103 aaKnown RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 SP4Q02446 784 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FUT5Q11128 374 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 ARFRP1Q13795 201 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 C12orf74Q32Q52 190 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 VMA21Q3ZAQ7 101 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 NMSQ5H8A3 153 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 PRR9Q5T870 116 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 LINC01545Q5VT33 79 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 FKBP1CQ5VVH2 108 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TMEM136Q6ZRR5 245 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 AAED1Q7RTV5 226 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 SPATA12Q7Z6I5 190 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TEN1Q86WV5 123 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 BPIFA4PQ86YQ2 179 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 TMEM252Q8N6L7 170 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 CYB561D1Q8N8Q1 229 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 C15orf53Q8NAA6 179 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 APCDD1LQ8NCL9 501 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 STAG3L4Q8TBR4 150 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 RPS4Y2Q8TD47 263 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 LSM10Q969L4 123 aaKnown RBP1.2□□□□□ -2.22
NUP54-208ENST00000508604 RMI2Q96E14 147 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 BORCS8Q96FH0 119 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 KCNS1Q96KK3 526 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 UBE2E2Q96LR5 201 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 CARD19Q96LW7 228 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 AMELYQ99218 206 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 SRXN1Q9BYN0 137 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 AGPAT4-IT1Q9H0P7 198 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 CMC2Q9NRP2 79 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 NEUROG3Q9Y4Z2 214 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 OARD1Q9Y530 152 aa1.2□□□□□ -2.22
NUP54-208ENST00000508604 NHSL1Q5SYE7 1610 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 ADAMTS7Q9UKP4 1686 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 A0A0G2JMZ2 1700 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 LRRC37A2A6NM11 1700 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 LRRC37AA6NMS7 1700 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 LY75O60449 1722 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 DOT1LQ8TEK3 1739 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.19□□□□□ -2.22
NUP54-208ENST00000508604 DLG5Q8TDM6 1919 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 ERCC6L2Q5T890 1561 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 CASP8AP2Q9UKL3 1982 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 LRRC37A3O60309 1634 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 LMO7Q8WWI1 1683 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 TRAV12-2A0A075B6T6 113 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 SMIM26A0A096LP01 95 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 FAM236AA0A1B0GUQ0 79 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 FAM236BA0A1B0GV22 79 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms