RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CXorf1O96002 111 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 HLA-DMBP28068 263 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 GCHFRP30047 84 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 FHITP49789 147 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 PSG9Q00887 426 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 ACTL10Q5JWF8 245 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 DPPA3Q6W0C5 159 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 PHYHIPLQ96FC7 376 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 CITED4Q96RK1 184 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 MAP1LC3BQ9GZQ8 125 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 AAMDCQ9H7C9 122 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 CLEC5AQ9NY25 188 aa7.42□□□□□ -1.22
NUP54-203ENST00000504173 HUWE1Q7Z6Z7 4374 aaKnown RBP7.42□□□□□ -1.22
NUP54-203ENST00000504173 A8MZ25 164 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 NDUFB4O95168 129 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 FRMD6-AS1P0C7T7 363 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 SULT1A2P50226 295 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 RAB5CP51148 216 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 FGF8P55075 233 aaPredicted RBP7.41□□□□□ -1.22
NUP54-203ENST00000504173 DEFB1P60022 68 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 PSG3Q16557 428 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 EBLN2Q6P2I7 272 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 FOXI2Q6ZQN5 318 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 STHQ8IWL8 128 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 TMEM167BQ9NRX6 74 aa7.41□□□□□ -1.22
NUP54-203ENST00000504173 LOC102724200A0A096LPH7 203 aaPredicted RBP7.4□□□□□ -1.22
NUP54-203ENST00000504173 RPL35AP18077 110 aaKnown RBP7.4□□□□□ -1.22
NUP54-203ENST00000504173 RANP62826 216 aaKnown RBP7.4□□□□□ -1.22
NUP54-203ENST00000504173 ICAM4Q14773 271 aa7.4□□□□□ -1.22
NUP54-203ENST00000504173 FAM74A1Q5RGS3 127 aa7.4□□□□□ -1.22
NUP54-203ENST00000504173 ALKAL2Q6UX46 152 aa7.4□□□□□ -1.22
NUP54-203ENST00000504173 EXOC3-AS1Q8N2X6 119 aa7.4□□□□□ -1.22
NUP54-203ENST00000504173 SFT2D1Q8WV19 159 aa7.4□□□□□ -1.22
NUP54-203ENST00000504173 Q9H3A6 140 aa7.4□□□□□ -1.22
NUP54-203ENST00000504173 SAV1Q9H4B6 383 aaPredicted RBP7.4□□□□□ -1.22
NUP54-203ENST00000504173 PRELID1Q9Y255 219 aa7.4□□□□□ -1.22
NUP54-203ENST00000504173 ABCA13Q86UQ4 5058 aa7.4□□□□□ -1.23
NUP54-203ENST00000504173 A0A1B0GV50 99 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 ZNF705FA8MVS1 300 aaPredicted RBP7.39□□□□□ -1.23
NUP54-203ENST00000504173 F6UB75 175 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 M0R3E3 92 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 H2AFB1P0C5Y9 115 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 PRB4P10163 310 aaPredicted RBP7.39□□□□□ -1.23
NUP54-203ENST00000504173 HLA-DRB4P13762 266 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 GDF5OSQ5U4N7 250 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 TRPT1Q86TN4 253 aaKnown RBP7.39□□□□□ -1.23
NUP54-203ENST00000504173 LYPD1Q8N2G4 141 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 MBD3L1Q8WWY6 194 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 RPUSD4Q96CM3 377 aaKnown RBP7.39□□□□□ -1.23
NUP54-203ENST00000504173 MRPL53Q96EL3 112 aaKnown RBP7.39□□□□□ -1.23
NUP54-203ENST00000504173 TMPRSS5Q9H3S3 457 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 OTORQ9NRC9 128 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 HLA-DRB4X5D2U9 266 aa7.39□□□□□ -1.23
NUP54-203ENST00000504173 A0A0J9YX75 114 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 PGPA6NDG6 321 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 ZNF705EA8MWA4 302 aaPredicted RBP7.38□□□□□ -1.23
NUP54-203ENST00000504173 H3BMM0 161 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 TEX46H3BTG2 121 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 DUSP14O95147 198 aaKnown RBP7.38□□□□□ -1.23
NUP54-203ENST00000504173 IGKV3-20P01619 116 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 CSN1S1P47710 185 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 APOC4P55056 127 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 HIST1H1AQ02539 215 aaPredicted RBP7.38□□□□□ -1.23
NUP54-203ENST00000504173 LINC00322Q6ZN03 302 aaPredicted RBP7.38□□□□□ -1.23
NUP54-203ENST00000504173 OR4B1Q8NGF8 309 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 OR8A1Q8NGG7 326 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 SUN5Q8TC36 379 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 ASCL2Q99929 193 aa7.38□□□□□ -1.23
NUP54-203ENST00000504173 AGRNO00468 2067 aa7.37□□□□□ -1.23
NUP54-203ENST00000504173 PLECQ15149 4684 aaKnown RBP7.37□□□□□ -1.23
NUP54-203ENST00000504173 PRAC2D3DTV9 90 aa7.37□□□□□ -1.23
NUP54-203ENST00000504173 HBE1P02100 147 aa7.37□□□□□ -1.23
NUP54-203ENST00000504173 SLC25A5P05141 298 aaKnown RBP7.37□□□□□ -1.23
NUP54-203ENST00000504173 ZNF705DP0CH99 300 aaPredicted RBP7.37□□□□□ -1.23
NUP54-203ENST00000504173 ZNF705BP0CI00 300 aaPredicted RBP7.37□□□□□ -1.23
NUP54-203ENST00000504173 CNN1P51911 297 aaKnown RBP7.37□□□□□ -1.23
NUP54-203ENST00000504173 UBE2G2P60604 165 aa7.37□□□□□ -1.23
NUP54-203ENST00000504173 OR10J6PQ8NGY7 276 aa7.37□□□□□ -1.23
NUP54-203ENST00000504173 CMTM2Q8TAZ6 248 aa7.37□□□□□ -1.23
NUP54-203ENST00000504173 RXFP4Q8TDU9 374 aa7.37□□□□□ -1.23
NUP54-203ENST00000504173 KIR2DL5BA0A0G2JN68 375 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 KIR2DL5BA0A0G2JPC4 375 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 A0A1W2PRE2 83 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 PPT1P50897 306 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 NUTF2P61970 127 aaKnown RBP7.36□□□□□ -1.23
NUP54-203ENST00000504173 BLOC1S1P78537 153 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 HAGHQ16775 308 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 MORN3Q6PF18 240 aaPredicted RBP7.36□□□□□ -1.23
NUP54-203ENST00000504173 SBSPONQ8IVN8 264 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 KIR2DL5AQ8N109 375 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 KIR2DL5BQ8NHK3 375 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 CSTL1Q9H114 145 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 PPP1R14DQ9NXH3 145 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 RPH3ALQ9UNE2 315 aa7.36□□□□□ -1.23
NUP54-203ENST00000504173 YTHDF2Q9Y5A9 579 aaKnown RBP7.36□□□□□ -1.23
NUP54-203ENST00000504173 HECTD4Q9Y4D8 3996 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 ALMS1Q8TCU4 4167 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 IGKV2-40A0A087WW87 121 aaPredicted RBP7.35□□□□□ -1.23
NUP54-203ENST00000504173 TRAV1-1A0A0B4J248 108 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 FAM74A7A6NL05 159 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms