RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PRSS22Q9GZN4 317 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 IGHV3-66A0A0C4DH42 116 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 IGLV2-11P01706 119 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 PRTN3P24158 256 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 CRIP1P50238 77 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 ZNF491Q8N8L2 437 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 CHRDL1Q9BU40 450 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 ODF3BA8MYP8 253 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 RELQ04864 619 aaPredicted RBP12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 MRPL52Q86TS9 123 aaKnown RBP12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 TMEM191AQ9H0A3 160 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 K7EMI3 77 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 TAX1BP3O14907 124 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 GNG7O60262 68 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 RBX1P62877 108 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 BVES-AS1Q5T3Y7 98 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 FA2HQ7L5A8 372 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 RNF125Q96EQ8 232 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 FANCD2OSQ96PS1 177 aa12.95□□□□□ -0.34
CCDC88B-210ENST00000494566 D6R8Y8 96 aa12.94□□□□□ -0.34
CCDC88B-210ENST00000494566 CEACAM3P40198 252 aa12.94□□□□□ -0.34
CCDC88B-210ENST00000494566 A0A1B0GUT8 65 aa12.94□□□□□ -0.34
CCDC88B-210ENST00000494566 OR5AL1P0C617 328 aa12.94□□□□□ -0.34
CCDC88B-210ENST00000494566 AP5S1Q9NUS5 200 aa12.94□□□□□ -0.34
CCDC88B-210ENST00000494566 IGHV3-49A0A0A0MS15 119 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 NDUFA3O95167 84 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 HOXB4P17483 251 aaPredicted RBP12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 RASL11AQ6T310 242 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 ATP5L2Q7Z4Y8 100 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 ARPC1AQ92747 370 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 PSG8Q9UQ74 426 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 RNF5Q99942 180 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 OTORQ9NRC9 128 aa12.93□□□□□ -0.34
CCDC88B-210ENST00000494566 TRAV8-6A0A0B4J262 113 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 GAS8-AS1O95177 125 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 NEU4Q8WWR8 484 aaPredicted RBP12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 VPS25Q9BRG1 176 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 SHANK2-AS3Q9BTD1 123 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 TTTY13Q9BZ97 58 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 TRBV19A0A075B6N1 114 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 M0R1W7 72 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 HLA-DRB1P01911 266 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 ANKRD39Q53RE8 183 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 LYZL1Q6UWQ5 148 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 NPBQ8NG41 125 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 H3BRN7 92 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 BPIFA4PQ86YQ2 179 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 MSRB1Q9NZV6 116 aa12.92□□□□□ -0.34
CCDC88B-210ENST00000494566 NPIPB5A8MRT5 1133 aa12.91□□□□□ -0.34
CCDC88B-210ENST00000494566 F8W735 103 aaPredicted RBP12.91□□□□□ -0.34
CCDC88B-210ENST00000494566 C19orf84I3L1E1 186 aa12.91□□□□□ -0.34
CCDC88B-210ENST00000494566 CACNG7P62955 275 aa12.91□□□□□ -0.34
CCDC88B-210ENST00000494566 PAX2Q02962 417 aa12.91□□□□□ -0.34
CCDC88B-210ENST00000494566 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.91□□□□□ -0.343e-6■■□□□ 11.5
CCDC88B-210ENST00000494566 NMUP48645 174 aa12.9□□□□□ -0.34
CCDC88B-210ENST00000494566 PSG9Q00887 426 aa12.9□□□□□ -0.34
CCDC88B-210ENST00000494566 SIGLEC15Q6ZMC9 328 aa12.9□□□□□ -0.34
CCDC88B-210ENST00000494566 IGLV11-55A0A075B6I3 123 aa12.9□□□□□ -0.34
CCDC88B-210ENST00000494566 IGHV3OR16-10A0A075B7F0 116 aa12.9□□□□□ -0.34
CCDC88B-210ENST00000494566 EVI2AP22794 236 aa12.9□□□□□ -0.34
CCDC88B-210ENST00000494566 PIEZO1Q92508 2521 aa12.9□□□□□ -0.35
CCDC88B-210ENST00000494566 IGHV2-70DA0A0C4DH43 119 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 K7EP13 123 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 BPESC1Q9GZL8 116 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 SCRT2Q9NQ03 307 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 PPP1R14DQ9NXH3 145 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 TMEM14CQ9P0S9 112 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 SPRY2O43597 315 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 ECSCRQ19T08 205 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 ZNF562Q6V9R5 426 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 CHCHD1Q96BP2 118 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 ST20Q9HBF5 79 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 ABCA2Q9BZC7 2435 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 CENPEQ02224 2701 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 DTX2Q86UW9 622 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 ZNF414Q96IQ9 312 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 THYN1Q9P016 225 aa12.89□□□□□ -0.35
CCDC88B-210ENST00000494566 J3KRW8 73 aa12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 GPR183P32249 361 aa12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 C21orf62Q9NYP8 219 aa12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 IGHV7-81A0A0B4J1V7 117 aa12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 MRPS12O15235 138 aaKnown RBP12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 EGR2P11161 476 aaPredicted RBP12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 MFAP4P55083 255 aa12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 TWIST1Q15672 202 aa12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 DEFB104AQ8WTQ1 72 aa12.88□□□□□ -0.35
CCDC88B-210ENST00000494566 LINC01548A6NM66 108 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 ZNF207O43670 478 aaKnown RBP12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 SAP30O75446 220 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 CT45A10P0DMU9 189 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 GATA1P15976 413 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 RHOGP84095 191 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 ZNF747Q9BV97 191 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 SIGLEC8Q9NYZ4 499 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 HSPB8Q9UJY1 196 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 WI2-2373I1.2A0A1W2PRP0 233 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 SRSF8Q9BRL6 282 aaKnown RBP12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 NDFIP1Q9BT67 221 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 ZNF492Q9P255 531 aa12.87□□□□□ -0.35
CCDC88B-210ENST00000494566 HAX1O00165 279 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms