RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 AMN1Q8IY45 258 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 TMEM249Q2WGJ8 235 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 ZC2HC1BQ5TFG8 222 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 PRSS57Q6UWY2 283 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 TSSC4Q9Y5U2 329 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 ETDBQ3ZM63 59 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 BPESC1Q9GZL8 116 aa13.12□□□□□ -0.31
CCDC88B-209ENST00000494080 HOXA3O43365 443 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 KRTAP27-1Q3LI81 207 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 PVRIGQ6DKI7 326 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 HTTP42858 3142 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 SMKR1H3BMG3 65 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 TMEM155Q4W5P6 130 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 TRAV8-2A0A0B4J237 113 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 A0A1W2PPI3 338 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 AZU1P20160 251 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 LOXP28300 417 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 TEX29Q8N6K0 151 aa13.11□□□□□ -0.31
CCDC88B-209ENST00000494080 CRXO43186 299 aaPredicted RBP13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 TOMM40O96008 361 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 ZC2HC1AQ96GY0 325 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 K7EP34 96 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 PPBPP02775 128 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 CNTFRP26992 372 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 DIAPH2-AS1Q14236 149 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 FNDC10F2Z333 226 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 GRNP28799 593 aaKnown RBP13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 FAM231DQ6ZW35 169 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 Q8TCH9 128 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 CYSLTR1Q9Y271 337 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 C5orf64Q2M2E5 130 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 TMEM14BQ9NUH8 114 aa13.1□□□□□ -0.31
CCDC88B-209ENST00000494080 PRRC2CQ9Y520 2896 aaKnown RBP13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 FABP5P3A8MUU1 101 aa13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 WFDC12Q8WWY7 111 aa13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 CHAC1Q9BUX1 264 aa13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 C10orf142B7Z368 130 aa13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 C15orf32Q32M92 178 aa13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 ANKRD11Q6UB99 2663 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 MKI67P46013 3256 aaKnown RBP13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 FAM74A4Q5TZK3 123 aa13.09□□□□□ -0.31
CCDC88B-209ENST00000494080 LINC00173Q6ZV60 143 aa13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 SLC25A39Q9BZJ4 359 aaPredicted RBP13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 PRR20EP86478 221 aa13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 PRR20CP86479 221 aa13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 PRR20DP86480 221 aa13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 PRR20BP86481 221 aa13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 PRR20AP86496 221 aa13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 JMJD8Q96S16 334 aa13.08□□□□□ -0.32
CCDC88B-209ENST00000494080 C3orf36Q3SXR2 165 aa13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 SEM1Q6ZVN7 128 aa13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 GEMIN7Q9H840 131 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 DYSFO75923 2080 aa13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 ATP6V0BQ99437 205 aa13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 C5orf42Q9H799 3197 aa13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 LCNL1Q6ZST4 164 aa13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 Q86TA4 180 aa13.07□□□□□ -0.32
CCDC88B-209ENST00000494080 SRRM4A7MD48 611 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 CEACAM4O75871 244 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 GLMPQ8WWB7 406 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 TPSG1Q9NRR2 321 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 ZNF815PA8K554 130 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 PRTN3P24158 256 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 Q6ZPA2 131 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 SLC25A2Q9BXI2 301 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 CHD7Q9P2D1 2997 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 SPTBN4Q9H254 2564 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 IGKV2-40A0A087WW87 121 aaPredicted RBP13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 A0A1W2PPM0 123 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 IGKV2D-40P01614 121 aaPredicted RBP13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 SPINK8P0C7L1 97 aa13.06□□□□□ -0.32
CCDC88B-209ENST00000494080 TAX1BP3O14907 124 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 TEX36Q5VZQ5 186 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 TRGV9Q99603 122 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 A8MWV9 139 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 KIR2DL4Q99706 377 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 GFRA4Q9GZZ7 299 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 TMEM213A2RRL7 107 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 CRIP3Q6Q6R5 217 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 CEP192Q8TEP8 1941 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 SMPXQ9UHP9 88 aa13.05□□□□□ -0.32
CCDC88B-209ENST00000494080 FAM159AQ6UWV7 190 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 VCX2Q9H322 139 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 PRSS47A8MTI9 375 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 ZNF295-AS1Q8N0V1 137 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 M0R1W7 72 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 SAA4P35542 130 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 WT1-ASQ06250 92 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 CT83Q5H943 113 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 Q8TAT8 98 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 RNF5Q99942 180 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 NDUFA4L2Q9NRX3 87 aa13.04□□□□□ -0.32
CCDC88B-209ENST00000494080 H3BUX3 64 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 SNRPD3P62318 126 aaKnown RBP13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 SRSF1Q07955 248 aaKnown RBP eCLIP13.03□□□□□ -0.328e-7■■■■□ 25.6
CCDC88B-209ENST00000494080 TMEM158Q8WZ71 300 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 DDB2Q92466 427 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 GAGE12HA6NDE8 117 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 MINOS1Q5TGZ0 78 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 ZNF492Q9P255 531 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms