RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR2M3Q8NG83 312 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 OR51T1Q8NGJ9 327 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 OR4C16Q8NGL9 310 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 OR5H2Q8NGV7 314 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ZNRF2Q8NHG8 242 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 C18orf32Q8TCD1 76 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DOK4Q8TEW6 326 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 GEMIN6Q8WXD5 167 aaKnown RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 AQP3Q92482 292 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ARPC1AQ92747 370 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM54Q969K7 222 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RAB37Q96AX2 223 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 C8orf44Q96CB5 159 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 GNPNAT1Q96EK6 184 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TIMD4Q96H15 378 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 HPDLQ96IR7 371 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PRELID3AQ96N28 172 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 AQP10Q96PS8 301 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DERL3Q96Q80 235 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RASL11BQ9BPW5 248 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PRADC1Q9BSG0 188 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TM2D1Q9BX74 207 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RHOJQ9H4E5 214 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 SMDT1Q9H4I9 107 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 GPR84Q9NQS5 396 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PRTFDC1Q9NRG1 225 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM242Q9NWH2 141 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 EHFQ9NZC4 300 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ABRACLQ9P1F3 81 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PRNDQ9UKY0 176 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FZR1Q9UM11 496 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF835Q9Y2P0 537 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 POLR1DQ9Y2S0 133 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 HILPDAQ9Y5L2 63 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DNAJC15Q9Y5T4 150 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 KCNE3Q9Y6H6 103 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 U3KQA8 63 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DOCK5Q9H7D0 1870 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 AKAP6Q13023 2319 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PLIN4Q96Q06 1357 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 A0A0U1RQV1 116 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 FAM236DA0A1B0GTK5 79 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1W2PRD5 423 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1W2PRF3 423 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1W2PRM7 423 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 E9PLD3 99 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 F2Z2F3 143 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 C17orf112F2Z3M2 114 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 F8W1H4 67 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM250H0YL14 139 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 H3BMH7 237 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 SOCS1O15524 211 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 MPDU1O75352 247 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF737O75373 536 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 APOMO95445 188 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 LSM8O95777 96 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 CXorf1O96002 111 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 APOA2P02652 100 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 APOC2P02655 101 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 PRB2P02812 416 aaPredicted RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 MT-ND6P03923 174 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A5P05141 298 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 GPX1P07203 203 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 MRPL3P09001 348 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 SEC11BP0C7V7 166 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 FAM236CP0DP71 79 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 CRISP2P16562 243 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 CDK2P24941 298 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 PRSS3P35030 304 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 EMDP50402 254 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 LHX2P50458 406 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 STC1P52823 247 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 HSPE1P61604 102 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 HERVK_113P63121 156 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 SLC35B1P78383 322 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 FMODQ06828 376 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 HES1Q14469 280 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 GUSBP1Q15486 140 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF141Q15928 474 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 PMCHL1Q16048 86 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ETDBQ3ZM63 59 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 LINC01620Q4KN68 170 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 Q56UQ5 140 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF678Q5SXM1 525 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 C9orf153Q5TBE3 101 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 TSPO2Q5TGU0 170 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 Q5XG85 94 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 OTPQ5XKR4 325 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 C12orf73Q69YU5 71 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 TRIM40Q6P9F5 258 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 TCF23Q7RTU1 214 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 CEND1Q8N111 149 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 C10orf126Q8N4M7 172 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 CLDN19Q8N6F1 224 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 KIR3DL3Q8N743 410 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 TPRX1Q8N7U7 411 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 OR8S1Q8NH09 359 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 OR4K13Q8NH42 304 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF563Q8TA94 476 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms