RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ZNF833PQ6ZTB9 187 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 ARPINQ7Z6K5 226 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 NUP35Q8NFH5 326 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 OR5H6Q8NGV6 325 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 ISOC1Q96CN7 298 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 PLEKHB2Q96CS7 222 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 CARD19Q96LW7 228 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 BOLA2Q9H3K6 86 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 TRAPPC2LQ9UL33 140 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 BOKQ9UMX3 212 aaPredicted RBP0.5□□□□□ -2.33
PTPN4-212ENST00000488896 LAMTOR2Q9Y2Q5 125 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 NUBP2Q9Y5Y2 271 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 ASCC3Q8N3C0 2202 aaKnown RBP0.5□□□□□ -2.33
PTPN4-212ENST00000488896 NINQ8N4C6 2090 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 MCM3APO60318 1980 aa0.5□□□□□ -2.33
PTPN4-212ENST00000488896 UHRF1BP1Q6BDS2 1440 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 GABARAPH6UMI1 98 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 PGRMC1O00264 195 aaKnown RBP0.49□□□□□ -2.33
PTPN4-212ENST00000488896 TPT1P13693 172 aaKnown RBP0.49□□□□□ -2.33
PTPN4-212ENST00000488896 S100GP29377 79 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 S100A5P33763 92 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 SDC2P34741 201 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 MRPS36P82909 103 aaKnown RBP0.49□□□□□ -2.33
PTPN4-212ENST00000488896 OCIAD2Q56VL3 154 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 LINC00305Q7Z4B0 112 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 Q86TA4 180 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 C5orf17Q8NAS9 161 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 OR4B1Q8NGF8 309 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 OR10AG1Q8NH19 301 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 OR4C12Q96R67 309 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 LXNQ9BS40 222 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 EFCAB11Q9BUY7 163 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 OR2H1Q9GZK4 316 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 MRPL40Q9NQ50 206 aaKnown RBP0.49□□□□□ -2.33
PTPN4-212ENST00000488896 NIT2Q9NQR4 276 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 FKBP11Q9NYL4 201 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 IL20Q9NYY1 176 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 ATPIF1Q9UII2 106 aa0.49□□□□□ -2.33
PTPN4-212ENST00000488896 ARHGEF11O15085 1522 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 SBF1O95248 1867 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 TRAV5A0A0B4J249 113 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 A0A1B0GV72 72 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 BBIP1A8MTZ0 92 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 E7EQ34 232 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 H3BMG7 143 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 IGLV3-1P01715 115 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 TRACP01848 142 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 CD14P08571 375 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 BCL2P10415 239 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 FABP4P15090 132 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 KDELR1P24390 212 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 EFNA4P52798 201 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 KRTAP26-1Q6PEX3 210 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 HRCT1Q6UXD1 115 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 CASC2Q6XLA1 102 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 C3orf62Q6ZUJ4 267 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 SBSPONQ8IVN8 264 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 OR5AS1Q8N127 324 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 Q8N6K4 173 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 TMEM35BQ8NCS4 154 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 PLPP5Q8NEB5 264 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 OR10AC1Q8NH08 325 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 OR5AK2Q8NH90 309 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 RMND5BQ96G75 393 aaPredicted RBP0.48□□□□□ -2.33
PTPN4-212ENST00000488896 PRELID3AQ96N28 172 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 CST11Q9H112 138 aa0.48□□□□□ -2.33
PTPN4-212ENST00000488896 KDM6AO15550 1401 aaPredicted RBP0.47□□□□□ -2.33
PTPN4-212ENST00000488896 ZGRF1Q86YA3 2104 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 CITO14578 2027 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 TRAV13-1A0A0B4J241 112 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 TRDV1A0A1B0GX56 115 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 A0A1W2PRE2 83 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 ZNF727A8MUV8 499 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 M0QZK8 103 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 SNRPD3P62318 126 aaKnown RBP0.47□□□□□ -2.33
PTPN4-212ENST00000488896 SAMD13Q5VXD3 122 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 FOXI2Q6ZQN5 318 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 PHF5AQ7RTV0 110 aaKnown RBP0.47□□□□□ -2.33
PTPN4-212ENST00000488896 SMIM15Q7Z3B0 74 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 KRTAP19-3Q7Z4W3 81 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 TMEM229BQ8NBD8 167 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 LRTM1Q9HBL6 345 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 NUP98P52948 1817 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 N4BP2Q86UW6 1770 aaPredicted RBP0.47□□□□□ -2.33
PTPN4-212ENST00000488896 TNS3Q68CZ2 1445 aa0.47□□□□□ -2.33
PTPN4-212ENST00000488896 A0A087WSZ3 146 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.46□□□□□ -2.34
PTPN4-212ENST00000488896 A0A1W2PPM0 123 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 H7BYZ3 331 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 SULT1C4O75897 302 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 CRYGSP22914 178 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 FOXA3P55318 350 aaPredicted RBP0.46□□□□□ -2.34
PTPN4-212ENST00000488896 TMEM128Q5BJH2 165 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.46□□□□□ -2.34
PTPN4-212ENST00000488896 BRK1Q8WUW1 75 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 AP1S3Q96PC3 154 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 LIMD2Q9BT23 127 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 TAF9BQ9HBM6 251 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 FANCMQ8IYD8 2048 aa0.46□□□□□ -2.34
PTPN4-212ENST00000488896 EIF3AQ14152 1382 aaKnown RBP0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms