RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ZNF883P0CG24 379 aa10.87□□□□□ -0.67
USP42-206ENST00000479544 C17orf58Q2M2W7 97 aa10.87□□□□□ -0.67
USP42-206ENST00000479544 TMEM167AQ8TBQ9 72 aa10.87□□□□□ -0.67
USP42-206ENST00000479544 FXYD5Q96DB9 178 aa10.87□□□□□ -0.67
USP42-206ENST00000479544 EPG5Q9HCE0 2579 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 TEX48A0A1B0GUV7 120 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 AZU1P20160 251 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 PRTN3P24158 256 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 SH2D6Q7Z4S9 175 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 GAFA1Q96PS6 74 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 C1RLQ9NZP8 487 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 ZNF815PA8K554 130 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 RNF138Q8WVD3 245 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 CSTL1Q9H114 145 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 LY6HO94772 140 aa10.86□□□□□ -0.67
USP42-206ENST00000479544 SRSF8Q9BRL6 282 aaKnown RBP10.86□□□□□ -0.67
USP42-206ENST00000479544 HOXA3O43365 443 aaPredicted RBP10.85□□□□□ -0.67
USP42-206ENST00000479544 C1orf162Q8NEQ5 155 aaPredicted RBP10.85□□□□□ -0.67
USP42-206ENST00000479544 SIGLEC8Q9NYZ4 499 aa10.85□□□□□ -0.67
USP42-206ENST00000479544 ZNF256Q9Y2P7 627 aaPredicted RBP10.85□□□□□ -0.67
USP42-206ENST00000479544 FAM120AOSQ5T036 256 aa10.85□□□□□ -0.67
USP42-206ENST00000479544 CLEC19AQ6UXS0 136 aa10.85□□□□□ -0.67
USP42-206ENST00000479544 ARPC1AQ92747 370 aa10.85□□□□□ -0.67
USP42-206ENST00000479544 CD59P13987 128 aa10.85□□□□□ -0.67
USP42-206ENST00000479544 LGALS3P17931 250 aaKnown RBP10.85□□□□□ -0.67
USP42-206ENST00000479544 NDUFA4L2Q9NRX3 87 aa10.85□□□□□ -0.67
USP42-206ENST00000479544 VCANP13611 3396 aa10.85□□□□□ -0.67
USP42-206ENST00000479544 METTL26Q96S19 204 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 ZNF747Q9BV97 191 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 RAB1BQ9H0U4 201 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 A0A1B0GW15 77 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 H3BRM9 83 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 GDF5OSQ5U4N7 250 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 PGPEP1Q9NXJ5 209 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 DPM3Q9P2X0 92 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 CCDC168Q8NDH2 2452 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 LINC00310P59036 64 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 ERCC8Q13216 396 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 FAM231DQ6ZW35 169 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 SLC25A15Q9Y619 301 aa10.84□□□□□ -0.67
USP42-206ENST00000479544 K7EP34 96 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 SPRY2O43597 315 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 WISP2O76076 250 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 NPYP01303 97 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 OR10J6PQ8NGY7 276 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 ANAPC13Q9BS18 74 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 NXT2Q9NPJ8 142 aaKnown RBP10.83□□□□□ -0.68
USP42-206ENST00000479544 A0A1W2PPM0 123 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 C3orf36Q3SXR2 165 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 PATE2Q6UY27 113 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 GTSF1Q8WW33 167 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 TRGV9Q99603 122 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 MRPL36Q9P0J6 103 aaKnown RBP10.83□□□□□ -0.68
USP42-206ENST00000479544 CHD9Q3L8U1 2897 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 C2orf70A6NJV1 201 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 E7EUB6 86 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 IGHV4-39P01824 125 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 UCNP55089 124 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 MDS2Q8NDY4 140 aa10.83□□□□□ -0.68
USP42-206ENST00000479544 TNRC6AQ8NDV7 1962 aaKnown RBP10.82□□□□□ -0.68
USP42-206ENST00000479544 SNCGO76070 127 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 PF4V1P10720 104 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 TMPRSS3P57727 454 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 TMEM249Q2WGJ8 235 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 DAZAP2Q15038 168 aaPredicted RBP10.82□□□□□ -0.68
USP42-206ENST00000479544 SIGLEC9Q9Y336 463 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 TRAV26-2A0A0B4J265 109 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 SPINK8P0C7L1 97 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 MRPL51Q4U2R6 128 aaKnown RBP10.82□□□□□ -0.68
USP42-206ENST00000479544 ZNF503Q96F45 646 aa10.82□□□□□ -0.68
USP42-206ENST00000479544 IGHV3-11P01762 117 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 GATA1P15976 413 aaPredicted RBP10.81□□□□□ -0.68
USP42-206ENST00000479544 A0A0U1RRA0 63 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 SRD5A1P18405 259 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 KLRD1Q13241 179 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 ANXA2RQ3ZCQ2 193 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 ZNF474Q6S9Z5 364 aaPredicted RBP10.81□□□□□ -0.68
USP42-206ENST00000479544 LY6EQ16553 131 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 FAM104BQ5XKR9 115 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 IGHV1-8P0DP01 117 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 TMEM30BQ3MIR4 351 aa10.81□□□□□ -0.68
USP42-206ENST00000479544 EFNA4P52798 201 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 NDPQ00604 133 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 ZNF56Q15929 161 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 LINC00322Q6ZN03 302 aaPredicted RBP10.8□□□□□ -0.68
USP42-206ENST00000479544 FAM167A-AS1Q96KT0 104 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 CHTOPQ9Y3Y2 248 aaKnown RBP10.8□□□□□ -0.68
USP42-206ENST00000479544 USP9YO00507 2555 aaPredicted RBP10.8□□□□□ -0.68
USP42-206ENST00000479544 TRAV2A0A0B4J234 112 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 TNFRSF6BO95407 300 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 CTRLP40313 264 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 KRTAP27-1Q3LI81 207 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 CCDC144NLQ6NUI1 221 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 RAX2Q96IS3 184 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 KIR2DL4Q99706 377 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 ABCA2Q9BZC7 2435 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 GAGE12HA6NDE8 117 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 NBR2O15453 112 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 FAM106CPP0CH98 169 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 FAM106AQ4KMX7 169 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms