RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 LINC01559Q495D7 138 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 ANKHD1Q8IWZ3 2542 aaKnown RBP11.6□□□□□ -0.55
HDAC6-220ENST00000477528 IGHV1-69DA0A0B4J2H0 117 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 HAX1O00165 279 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 IGHV1-69P01742 117 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 RUSC1-AS1Q66K80 236 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 G3V318 75 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 H7C1H1 209 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 PSMB2P49721 201 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 PAPPA-AS1Q5QFB9 102 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 C8orf49Q96NF6 230 aa11.6□□□□□ -0.55
HDAC6-220ENST00000477528 CD7P09564 240 aa11.59□□□□□ -0.55
HDAC6-220ENST00000477528 UTF1Q5T230 341 aa11.59□□□□□ -0.55
HDAC6-220ENST00000477528 WIPF2Q8TF74 440 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-220ENST00000477528 ORMDL2Q53FV1 153 aa11.59□□□□□ -0.55
HDAC6-220ENST00000477528 C22orf34Q6ZV56 151 aa11.59□□□□□ -0.55
HDAC6-220ENST00000477528 I3L2K1 104 aa11.59□□□□□ -0.55
HDAC6-220ENST00000477528 DUSP14O95147 198 aaKnown RBP11.59□□□□□ -0.55
HDAC6-220ENST00000477528 SMIM13P0DJ93 91 aa11.58□□□□□ -0.55
HDAC6-220ENST00000477528 SMAGPQ0VAQ4 97 aa11.58□□□□□ -0.55
HDAC6-220ENST00000477528 ERCC8Q13216 396 aa11.58□□□□□ -0.55
HDAC6-220ENST00000477528 NPBQ8NG41 125 aa11.58□□□□□ -0.55
HDAC6-220ENST00000477528 E7EUB6 86 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 FBXL19-AS1Q494R0 122 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 PRSS46E5RG02 174 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 DPM2O94777 84 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 GP9P14770 177 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 PLP1P60201 277 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 ASPHD1Q5U4P2 390 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 ZC2HC1AQ96GY0 325 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 PRR25Q96S07 402 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 ATG2AQ2TAZ0 1938 aa11.58□□□□□ -0.56
HDAC6-220ENST00000477528 C1orf229Q6ZS94 237 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-220ENST00000477528 HOXB4P17483 251 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-220ENST00000477528 LURAP1LQ8IV03 231 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 IGF2BP2-AS1Q96M15 143 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 JKAMPQ9P055 326 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 PEMTQ9UBM1 199 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 MSMBP08118 114 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 LGALS3P17931 250 aaKnown RBP11.57□□□□□ -0.56
HDAC6-220ENST00000477528 DMRTA1Q5VZB9 504 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 DYSFO75923 2080 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 IGHV3OR16-12A0A075B7B8 117 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 SLC25A16P16260 332 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 SRD5A1P18405 259 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 hDV102S1A0JD36 115 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 K7EIM0 57 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 NDUFS7O75251 213 aa11.57□□□□□ -0.56
HDAC6-220ENST00000477528 TMEM213A2RRL7 107 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 IGKV1-17P01599 117 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 IFI27P40305 119 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-220ENST00000477528 ADORA2A-AS1P86434 159 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 FAM104BQ5XKR9 115 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 CDPF1Q6NVV7 123 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 SMPXQ9UHP9 88 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 EREGO14944 169 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 LAGE3Q14657 143 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 LDLRAD2Q5SZI1 272 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 RNF182Q8N6D2 247 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 DMRTC2Q8IXT2 367 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-220ENST00000477528 RHPN1-AS1Q9BWJ2 59 aa11.56□□□□□ -0.56
HDAC6-220ENST00000477528 NDUFA3O95167 84 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 IGKCP01834 107 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 C17orf77Q96MU5 243 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 RCHY1Q96PM5 261 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 TEX22C9J3V5 150 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 FAM120AOSQ5T036 256 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 SMAD7O15105 426 aaKnown RBP11.55□□□□□ -0.56
HDAC6-220ENST00000477528 GATA3P23771 443 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 PLA2G5P39877 138 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 DUX3Q96PT4 197 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 TNRC6AQ8NDV7 1962 aaKnown RBP11.55□□□□□ -0.56
HDAC6-220ENST00000477528 SMKR1H3BMG3 65 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 TMEM170BQ5T4T1 132 aa11.55□□□□□ -0.56
HDAC6-220ENST00000477528 DAZ1Q9NQZ3 744 aaKnown RBP11.55□□□□□ -0.56
HDAC6-220ENST00000477528 MRPL36Q9P0J6 103 aaKnown RBP11.55□□□□□ -0.56
HDAC6-220ENST00000477528 PSMB11A5LHX3 300 aa11.54□□□□□ -0.56
HDAC6-220ENST00000477528 TNFRSF18Q9Y5U5 241 aa11.54□□□□□ -0.56
HDAC6-220ENST00000477528 TMEM8BA6NDV4 472 aa11.54□□□□□ -0.56
HDAC6-220ENST00000477528 TEX43Q6ZNM6 134 aa11.54□□□□□ -0.56
HDAC6-220ENST00000477528 LINC01356Q8N9X3 169 aa11.54□□□□□ -0.56
HDAC6-220ENST00000477528 HTTP42858 3142 aa11.54□□□□□ -0.56
HDAC6-220ENST00000477528 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.53□□□□□ -0.563e-8■■■□□ 16.1
HDAC6-220ENST00000477528 CRYGCP07315 174 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 CYSLTR1Q9Y271 337 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 IGLV11-55A0A075B6I3 123 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 FXYD7P58549 80 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 OR9G4Q8NGQ1 327 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 IL17RELQ6ZVW7 336 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 SNHG12Q9BXW3 62 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 DPH3P1Q9H4G8 78 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 ZNF256Q9Y2P7 627 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-220ENST00000477528 OVOL3O00110 214 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 C8orf86Q6ZUL3 223 aa11.53□□□□□ -0.56
HDAC6-220ENST00000477528 MRPS16Q9Y3D3 137 aaKnown RBP11.53□□□□□ -0.56
HDAC6-220ENST00000477528 SEC11AP67812 179 aa11.52□□□□□ -0.56
HDAC6-220ENST00000477528 KLF5Q13887 457 aaPredicted RBP11.52□□□□□ -0.56
HDAC6-220ENST00000477528 ITLN2Q8WWU7 325 aaPredicted RBP11.52□□□□□ -0.56
HDAC6-220ENST00000477528 ARHGAP21Q5T5U3 1957 aa11.52□□□□□ -0.56
HDAC6-220ENST00000477528 RRN3P1Q2M238 152 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms