RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 TMEM14CQ9P0S9 112 aa8.56□□□□□ -1.04
SYNE1-223ENST00000476519 HECTD4Q9Y4D8 3996 aa8.55□□□□□ -1.04
SYNE1-223ENST00000476519 TRAV5A0A0B4J249 113 aa8.55□□□□□ -1.04
SYNE1-223ENST00000476519 UBE2L5PA0A1B0GUS4 154 aa8.55□□□□□ -1.04
SYNE1-223ENST00000476519 H7BYZ3 331 aa8.55□□□□□ -1.04
SYNE1-223ENST00000476519 SNRPCP09234 159 aaKnown RBP8.55□□□□□ -1.04
SYNE1-223ENST00000476519 FGF7P21781 194 aa8.55□□□□□ -1.04
SYNE1-223ENST00000476519 MARVELD1Q9BSK0 173 aa8.55□□□□□ -1.04
SYNE1-223ENST00000476519 FAT2Q9NYQ8 4349 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 H3BTX0 84 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 SLC17A3O00476 420 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 PRM2P04554 102 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 HIST1H1EP10412 219 aaKnown RBP8.54□□□□□ -1.04
SYNE1-223ENST00000476519 AZU1P20160 251 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 DEFA1P59665 94 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 DEFA3P59666 94 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 NHLH2Q02577 135 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 RNF212Q495C1 297 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 OR5C1Q8NGR4 320 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 MRPL53Q96EL3 112 aaKnown RBP8.54□□□□□ -1.04
SYNE1-223ENST00000476519 ODF3Q96PU9 254 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 NPCDR1Q9BY65 106 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 ZNF586Q9NXT0 402 aa8.54□□□□□ -1.04
SYNE1-223ENST00000476519 TRBV19A0A075B6N1 114 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 PLAC8L1A1L4L8 177 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 CBY3A6NI87 242 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 PRAC2D3DTV9 90 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 SIX6O95475 246 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 DEFB130BP0DP73 79 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 DEFB130AP0DP74 79 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 HTN3P15516 51 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 PDE6HQ13956 83 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 C16orf74Q96GX8 76 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 PRELID1Q9Y255 219 aa8.53□□□□□ -1.04
SYNE1-223ENST00000476519 TIMM8BQ9Y5J9 83 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-223ENST00000476519 H0YIZ8 118 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 CT45A10P0DMU9 189 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 HTN1P15515 57 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 TMEM88Q6PEY1 159 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 LINC00336Q6ZUF6 198 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 CCDC28AQ8IWP9 274 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 C15orf53Q8NAA6 179 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 TMEM263Q8WUH6 116 aaKnown RBP8.52□□□□□ -1.05
SYNE1-223ENST00000476519 LINC00477Q96M19 166 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 BATF3Q9NR55 127 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 KCNIP2Q9NS61 270 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 OR5AC2Q9NZP5 309 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 TIMM9Q9Y5J7 89 aa8.52□□□□□ -1.05
SYNE1-223ENST00000476519 NPIPB6E9PJ23 425 aa8.51□□□□□ -1.05
SYNE1-223ENST00000476519 LEPP41159 167 aa8.51□□□□□ -1.05
SYNE1-223ENST00000476519 H2BFSP57053 126 aa8.51□□□□□ -1.05
SYNE1-223ENST00000476519 FAM3BP58499 235 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-223ENST00000476519 LGALS9BQ3B8N2 356 aa8.51□□□□□ -1.05
SYNE1-223ENST00000476519 LRRC37A5PQ49AS3 106 aa8.51□□□□□ -1.05
SYNE1-223ENST00000476519 GFI1BQ5VTD9 330 aa8.51□□□□□ -1.05
SYNE1-223ENST00000476519 RNASE8Q8TDE3 154 aaKnown RBP8.51□□□□□ -1.05
SYNE1-223ENST00000476519 PPP1R1CQ8WVI7 109 aa8.51□□□□□ -1.05
SYNE1-223ENST00000476519 WDR61Q9GZS3 305 aaKnown RBP8.51□□□□□ -1.05
SYNE1-223ENST00000476519 C17orf112F2Z3M2 114 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 SSNA1O43805 119 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 NDUFB4O95168 129 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 ATP5G1P05496 136 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 PET100P0DJ07 73 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 PRB4P10163 310 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-223ENST00000476519 ATP5G3P48201 142 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 CLINT1Q14677 625 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 KIR3DS1Q14943 382 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 FCN2Q15485 313 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 GCSAMLQ5JQS6 135 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 UBE2DNLQ8IWF7 75 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 THAP6Q8TBB0 222 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 FAM167A-AS1Q96KT0 104 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 AAMDCQ9H7C9 122 aa8.5□□□□□ -1.05
SYNE1-223ENST00000476519 F5H768 121 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 MPC2O95563 127 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 SLC25A5P05141 298 aaKnown RBP8.49□□□□□ -1.05
SYNE1-223ENST00000476519 NMBP08949 121 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 NBEAP1P0C6P0 100 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 PYYP10082 97 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 PYGO2Q9BRQ0 406 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 SLC25A2Q9BXI2 301 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 MRPL32Q9BYC8 188 aaKnown RBP8.49□□□□□ -1.05
SYNE1-223ENST00000476519 OR51M1Q9H341 326 aa8.49□□□□□ -1.05
SYNE1-223ENST00000476519 NOP10Q9NPE3 64 aaKnown RBP8.49□□□□□ -1.05
SYNE1-223ENST00000476519 M0R3E3 92 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 C9orf47Q6ZRZ4 202 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 MIR17HGQ75NE6 70 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 LINC00612Q8N6U2 182 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 BLNKQ8WV28 456 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 FAM19A4Q96LR4 140 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 ATP5SQ99766 215 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 PARD6GQ9BYG4 376 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-223ENST00000476519 AGPAT4-IT1Q9H0P7 198 aa8.48□□□□□ -1.05
SYNE1-223ENST00000476519 TRAV12-3A0A0B4J271 114 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 KLLNB2CW77 178 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 M0R2N4 97 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 IFNA5P01569 189 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 RPL12P30050 165 aaKnown RBP8.47□□□□□ -1.05
SYNE1-223ENST00000476519 DAZ2Q13117 558 aaKnown RBP8.47□□□□□ -1.05
SYNE1-223ENST00000476519 ERCC8Q13216 396 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms