RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 RHOBP62745 196 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 SOHLH1Q5JUK2 328 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 LCN15Q6UWW0 184 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 LINC00305Q7Z4B0 112 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 ZNF575Q86XF7 245 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 C16orf74Q96GX8 76 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 C20orf144Q9BQM9 153 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 KRTAP4-5Q9BYR2 181 aa8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 LSM5Q9Y4Y9 91 aaKnown RBP8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 TIMM8BQ9Y5J9 83 aaPredicted RBP8.55□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 HSPG2P98160 4391 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 PRAC2D3DTV9 90 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 F5H768 121 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 H3BQ15 152 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 H7BYZ3 331 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 SLC17A3O00476 420 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 GOSR2O14653 212 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 SSNA1O43805 119 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 BCAP31P51572 246 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 S100A10P60903 97 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 ZNF546Q86UE3 836 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 BPIFA4PQ86YQ2 179 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 TMEM263Q8WUH6 116 aaKnown RBP8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 SLC50A1Q9BRV3 221 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 NMES1Q9C002 83 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 LINC00588Q9Y4M8 146 aa8.54□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 LRP1BQ9NZR2 4599 aa8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 CAV2P51636 162 aa8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 TNP2Q05952 138 aa8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 IL15RAQ13261 267 aa8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 OPCMLQ14982 345 aa8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 LRRC20Q8TCA0 184 aa8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 RNF141Q8WVD5 230 aa8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 NOP10Q9NPE3 64 aaKnown RBP8.53□□□□□ -1.04
MSH5-SAPCD1-205ENST00000476085 SNRPCP09234 159 aaKnown RBP8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 PET100P0DJ07 73 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 HBG1P69891 147 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 HBG2P69892 147 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 RAB32Q13637 225 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 VWC2Q2TAL6 325 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 GFI1BQ5VTD9 330 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 STX12Q86Y82 276 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 CHAC2Q8WUX2 184 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ZNF503Q96F45 646 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ODF3Q96PU9 254 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ATG101Q9BSB4 218 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 DNAJC4Q9NNZ3 241 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 LYRM2Q9NU23 88 aaPredicted RBP8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 PXMP4Q9Y6I8 212 aa8.52□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 E5RGE8 158 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 NUDT3O95989 172 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 CT45A10P0DMU9 189 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 HTN1P15515 57 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 S100A11P31949 105 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 SULT1A1P50225 295 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 CCL18P55774 89 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 RAB31Q13636 194 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 C10orf113Q5VZT2 155 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 C6orf223Q8N319 242 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 PARD6GQ9BYG4 376 aaPredicted RBP8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 SLC25A31Q9H0C2 315 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 PPP1R14DQ9NXH3 145 aa8.51□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 TRAV5A0A0B4J249 113 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 NPIPB6E9PJ23 425 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 H3BNG1 76 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 H3BTX0 84 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 COX7A2P2O60397 106 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ZNF253O75346 499 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 HOXA5P20719 270 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 RPL29P47914 159 aaKnown RBP8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 CAMLGP49069 296 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ATP6V1FQ16864 119 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 RGS21Q2M5E4 152 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 MIC13Q5XKP0 118 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 SSX7Q7RTT5 188 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 RXFP4Q8TDU9 374 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ZNF586Q9NXT0 402 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 WDR83OSQ9Y284 106 aa8.5□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ABCA13Q86UQ4 5058 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 FAM24AA6NFZ4 105 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 CDK2AP2O75956 126 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 SIX6O95475 246 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 BAXQ07812 192 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 DAZ2Q13117 558 aaKnown RBP8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 GUK1Q16774 197 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 TMEM252Q8N6L7 170 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 OR10J6PQ8NGY7 276 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 FAM19A4Q96LR4 140 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 C18orf15Q96N68 181 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 UPK3BQ9BT76 320 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 KRTAP1-5Q9BYS1 174 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 Q9H8V8 135 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 UQCC1Q9NVA1 299 aa8.49□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 TRAV26-1A0A087WT03 109 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ZNF324O75467 553 aaPredicted RBP8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 CST7O76096 145 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 NDUFB4O95168 129 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 M6PRP20645 277 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 H2BFSP57053 126 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ESRGQ1W209 222 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms