RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 UQCC1Q9NVA1 299 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 PXMP4Q9Y6I8 212 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 F5H768 121 aa13.18□□□□□ -0.3
CCDC88B-206ENST00000473405 GFI1BQ5VTD9 330 aa13.18□□□□□ -0.3
CCDC88B-206ENST00000473405 TMEM263Q8WUH6 116 aaKnown RBP13.18□□□□□ -0.3
CCDC88B-206ENST00000473405 CCDC32Q9BV29 185 aa13.18□□□□□ -0.3
CCDC88B-206ENST00000473405 TIMM8BQ9Y5J9 83 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-206ENST00000473405 UBE2L5PA0A1B0GUS4 154 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 IGSF23A1L1A6 192 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 CBY3A6NI87 242 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 H7BYZ3 331 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 ATP5G1P05496 136 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 H2AFB2P0C5Z0 115 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 ATP5G3P48201 142 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 SULT1A1P50225 295 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 FAM3BP58499 235 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 S100A10P60903 97 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 RAB31Q13636 194 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 ZNF493Q6ZR52 646 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 Q6ZRG5 221 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 OR10J6PQ8NGY7 276 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 C20orf144Q9BQM9 153 aa13.17□□□□□ -0.3
CCDC88B-206ENST00000473405 RAB32Q13637 225 aa13.16□□□□□ -0.3
CCDC88B-206ENST00000473405 OR1L4Q8NGR5 311 aa13.16□□□□□ -0.3
CCDC88B-206ENST00000473405 PFDN5Q99471 154 aa13.16□□□□□ -0.3
CCDC88B-206ENST00000473405 NOP10Q9NPE3 64 aaKnown RBP13.16□□□□□ -0.3
CCDC88B-206ENST00000473405 SLC39A9Q9NUM3 307 aa13.16□□□□□ -0.3
CCDC88B-206ENST00000473405 NPIPB6E9PJ23 425 aa13.15□□□□□ -0.3
CCDC88B-206ENST00000473405 CT45A10P0DMU9 189 aa13.15□□□□□ -0.3
CCDC88B-206ENST00000473405 PVALBP20472 110 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-206ENST00000473405 RPL29P47914 159 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-206ENST00000473405 GUK1Q16774 197 aa13.15□□□□□ -0.3
CCDC88B-206ENST00000473405 TMEM252Q8N6L7 170 aa13.15□□□□□ -0.3
CCDC88B-206ENST00000473405 ZNF586Q9NXT0 402 aa13.15□□□□□ -0.3
CCDC88B-206ENST00000473405 NUDT3O95989 172 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 S100A11P31949 105 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 IFITM3Q01628 133 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 BAXQ07812 192 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 STX12Q86Y82 276 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 LINC00612Q8N6U2 182 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 ZNRF2Q8NHG8 242 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 CHAC2Q8WUX2 184 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 RNF141Q8WVD5 230 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 ODF3Q96PU9 254 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 ATG101Q9BSB4 218 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 ABCA13Q86UQ4 5058 aa13.14□□□□□ -0.31
CCDC88B-206ENST00000473405 FAM240BA0A1B0GVZ2 78 aa13.13□□□□□ -0.31
CCDC88B-206ENST00000473405 ZNF253O75346 499 aa13.13□□□□□ -0.31
CCDC88B-206ENST00000473405 MED14OSP0DP75 135 aa13.13□□□□□ -0.31
CCDC88B-206ENST00000473405 HBG1P69891 147 aa13.13□□□□□ -0.31
CCDC88B-206ENST00000473405 HBG2P69892 147 aa13.13□□□□□ -0.31
CCDC88B-206ENST00000473405 SOHLH1Q5JUK2 328 aa13.13□□□□□ -0.31
CCDC88B-206ENST00000473405 C1orf134Q5TEV5 83 aa13.13□□□□□ -0.31
CCDC88B-206ENST00000473405 TRBV19A0A075B6N1 114 aa13.12□□□□□ -0.31
CCDC88B-206ENST00000473405 FGF7P21781 194 aa13.12□□□□□ -0.31
CCDC88B-206ENST00000473405 ASAH1Q13510 395 aa13.12□□□□□ -0.31
CCDC88B-206ENST00000473405 MUC4Q99102 2169 aa13.12□□□□□ -0.31
CCDC88B-206ENST00000473405 J3KRW8 73 aa13.11□□□□□ -0.31
CCDC88B-206ENST00000473405 M0R3E3 92 aa13.11□□□□□ -0.31
CCDC88B-206ENST00000473405 NDUFB4O95168 129 aa13.11□□□□□ -0.31
CCDC88B-206ENST00000473405 MRPL53Q96EL3 112 aaKnown RBP13.11□□□□□ -0.31
CCDC88B-206ENST00000473405 NPCDR1Q9BY65 106 aa13.11□□□□□ -0.31
CCDC88B-206ENST00000473405 TMEM14CQ9P0S9 112 aa13.11□□□□□ -0.31
CCDC88B-206ENST00000473405 LINC00588Q9Y4M8 146 aa13.11□□□□□ -0.31
CCDC88B-206ENST00000473405 TRAV12-3A0A0B4J271 114 aa13.1□□□□□ -0.31
CCDC88B-206ENST00000473405 NBDYA0A0U1RRE5 68 aa13.1□□□□□ -0.31
CCDC88B-206ENST00000473405 UPK1BO75841 260 aa13.1□□□□□ -0.31
CCDC88B-206ENST00000473405 PYYP10082 97 aa13.1□□□□□ -0.31
CCDC88B-206ENST00000473405 LEPP41159 167 aa13.1□□□□□ -0.31
CCDC88B-206ENST00000473405 GCSAMLQ5JQS6 135 aa13.1□□□□□ -0.31
CCDC88B-206ENST00000473405 GPN1Q9HCN4 374 aaPredicted RBP13.1□□□□□ -0.31
CCDC88B-206ENST00000473405 HSPG2P98160 4391 aa13.09□□□□□ -0.31
CCDC88B-206ENST00000473405 MPDU1O75352 247 aa13.09□□□□□ -0.31
CCDC88B-206ENST00000473405 HOXA5P20719 270 aa13.09□□□□□ -0.31
CCDC88B-206ENST00000473405 ATP6V1FQ16864 119 aa13.09□□□□□ -0.31
CCDC88B-206ENST00000473405 MZT2BQ6NZ67 158 aa13.09□□□□□ -0.31
CCDC88B-206ENST00000473405 CCDC28AQ8IWP9 274 aa13.09□□□□□ -0.31
CCDC88B-206ENST00000473405 TRAV26-1A0A087WT03 109 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 GAGE12BA1L429 117 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 GAGE7O76087 117 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 GAGE12FP0CL80 117 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 GAGE12GP0CL81 117 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 GAGE12IP0CL82 117 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 HIST1H1EP10412 219 aaKnown RBP13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 CCL18P55774 89 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 ERCC8Q13216 396 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 PDE6HQ13956 83 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 ZNF575Q86XF7 245 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 THAP6Q8TBB0 222 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 FAM19A4Q96LR4 140 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 PYGO2Q9BRQ0 406 aa13.08□□□□□ -0.32
CCDC88B-206ENST00000473405 LRP1BQ9NZR2 4599 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 SNURFLB1AK76 121 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 KLLNB2CW77 178 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 SIX6O95475 246 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 RLN2P04090 185 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 M6PRP20645 277 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 NHLH2Q02577 135 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 SSX7Q7RTT5 188 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 EXOC3-AS1Q8N2X6 119 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms