RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CITED2Q99967 270 aaPredicted RBP9.75□□□□□ -0.85
VPS13D-205ENST00000473099 SMCO4Q9NRQ5 59 aa9.75□□□□□ -0.85
VPS13D-205ENST00000473099 RPH3ALQ9UNE2 315 aa9.75□□□□□ -0.85
VPS13D-205ENST00000473099 TRBV20OR9-2A0A075B6H5 130 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 RBAKDNA6NC62 111 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 CXorf65A6NEN9 183 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 CCL24O00175 119 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 CBLN1P23435 193 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 SLURP1P55000 103 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 DEFB136Q30KP8 78 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 C18orf65Q6ZTR6 163 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 GOLT1AQ6ZVE7 132 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 TCF24Q7RTU0 167 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 NDUFA11Q86Y39 141 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 OR9G4Q8NGQ1 327 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 C16orf92Q96LL3 132 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 IGF2BP2-AS1Q96M15 143 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 TUBA4BQ9H853 241 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 MLXQ9UH92 298 aa9.74□□□□□ -0.85
VPS13D-205ENST00000473099 ISLRO14498 428 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 SCO1O75880 301 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 ID1P41134 155 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 RPL11P62913 178 aaKnown RBP9.73□□□□□ -0.85
VPS13D-205ENST00000473099 BTN1A1Q13410 526 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 PSG3Q16557 428 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 BAGE2Q86Y30 109 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 OCC1Q8TAD7 63 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 ISOC2Q96AB3 205 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 RAX2Q96IS3 184 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 ZFP30Q9Y2G7 519 aa9.73□□□□□ -0.85
VPS13D-205ENST00000473099 M0R3E3 92 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 LTAP01374 205 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 FOLR2P14207 255 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 PAFAH1B2P68402 229 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 FLI1Q01543 452 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-205ENST00000473099 RNF212Q495C1 297 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 LCN12Q6JVE5 192 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 C11orf44Q8N8P7 122 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 FBN3Q75N90 2809 aa9.72□□□□□ -0.85
VPS13D-205ENST00000473099 TRAV2A0A0B4J234 112 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 TRAV34A0A0B4J273 112 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 A0A1W2PRX2 142 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 H7BYZ3 331 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 DNASE2O00115 360 aaPredicted RBP9.71□□□□□ -0.86
VPS13D-205ENST00000473099 SOCS3O14543 225 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 GCGP01275 180 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 Q86TA4 180 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 C15orf54Q8N8G6 183 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 DLX4Q92988 240 aaPredicted RBP9.71□□□□□ -0.86
VPS13D-205ENST00000473099 SFRP2Q96HF1 295 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 SIGLEC8Q9NYZ4 499 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 ATRQ13535 2644 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 DNHD1Q96M86 4753 aa9.71□□□□□ -0.86
VPS13D-205ENST00000473099 FBN1P35555 2871 aaKnown RBP9.71□□□□□ -0.86
VPS13D-205ENST00000473099 TRAV8-2A0A0B4J237 113 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 PGPEP1LA6NFU8 196 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 OVOL1O14753 267 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 IGLV2-8P01709 118 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 MGST1P10620 155 aaKnown RBP9.7□□□□□ -0.86
VPS13D-205ENST00000473099 SAPCD1Q5SSQ6 148 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 TMEM183AQ8IXX5 376 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 OR10G8Q8NGN5 311 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 DYNLRB2Q8TF09 96 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 LINC00479Q96M42 142 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 NDFIP1Q9BT67 221 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 MLST8Q9BVC4 326 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 OSTCQ9NRP0 149 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 PSG8Q9UQ74 426 aa9.7□□□□□ -0.86
VPS13D-205ENST00000473099 COL6A5A8TX70 2615 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 CUBNO60494 3623 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 K7EN84 100 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 IGLV2-11P01706 119 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 CSN3P07498 182 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 S100PP25815 95 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 TMEM88Q6PEY1 159 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 FAM231DQ6ZW35 169 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 PRNTQ86SH4 94 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.69□□□□□ -0.86
VPS13D-205ENST00000473099 ZNF738Q8NE65 137 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 BTF3L4Q96K17 158 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 IMMP2LQ96T52 175 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 MDFIQ99750 246 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 PPP1R14DQ9NXH3 145 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 LENEPQ9Y5L5 61 aa9.69□□□□□ -0.86
VPS13D-205ENST00000473099 TRAV25A0A0B4J276 109 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 ADARB2-AS1A8MUL3 147 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 HLA-DMBP28068 263 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 ERVFC1-1P60608 527 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 SNRPD3P62318 126 aaKnown RBP9.68□□□□□ -0.86
VPS13D-205ENST00000473099 C9orf47Q6ZRZ4 202 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 CBLN2Q8IUK8 224 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 RNF182Q8N6D2 247 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 DCANP1Q8TF63 244 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 DUX3Q96PT4 197 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 MS4A6AQ9H2W1 248 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 AURKAIP1Q9NWT8 199 aaPredicted RBP9.68□□□□□ -0.86
VPS13D-205ENST00000473099 ZNF492Q9P255 531 aa9.68□□□□□ -0.86
VPS13D-205ENST00000473099 SORL1Q92673 2214 aa9.67□□□□□ -0.86
VPS13D-205ENST00000473099 IGKV2-40A0A087WW87 121 aaPredicted RBP9.67□□□□□ -0.86
VPS13D-205ENST00000473099 TRAV8-1A0A0A6YYK1 113 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms