RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 TRBV19A0A075B6N1 114 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 PRAC2D3DTV9 90 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 MPC2O95563 127 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 PET100P0DJ07 73 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 HIST1H1EP10412 219 aaKnown RBP8.52□□□□□ -1.05
SYNE1-221ENST00000472563 CDKN1BP46527 198 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 OR10J6PQ8NGY7 276 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 FAM210BQ96KR6 192 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 NDUFAF3Q9BU61 184 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 KCNIP2Q9NS61 270 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 ZNF586Q9NXT0 402 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 KMT2AQ03164 3969 aa8.52□□□□□ -1.05
SYNE1-221ENST00000472563 ZNF705GA8MUZ8 300 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-221ENST00000472563 PRB4P10163 310 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-221ENST00000472563 TAS2R60P59551 318 aa8.51□□□□□ -1.05
SYNE1-221ENST00000472563 PDE6HQ13956 83 aa8.51□□□□□ -1.05
SYNE1-221ENST00000472563 CLINT1Q14677 625 aa8.51□□□□□ -1.05
SYNE1-221ENST00000472563 GCSAMLQ5JQS6 135 aa8.51□□□□□ -1.05
SYNE1-221ENST00000472563 MRPL53Q96EL3 112 aaKnown RBP8.51□□□□□ -1.05
SYNE1-221ENST00000472563 LINC01587Q99440 93 aa8.51□□□□□ -1.05
SYNE1-221ENST00000472563 WDR61Q9GZS3 305 aaKnown RBP8.51□□□□□ -1.05
SYNE1-221ENST00000472563 PLA2G2EQ9NZK7 142 aa8.51□□□□□ -1.05
SYNE1-221ENST00000472563 LYRM9A8MSI8 78 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 NDUFB4O95168 129 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 PRM2P04554 102 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 AZU1P20160 251 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 DAD1P61803 113 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 ODF3Q96PU9 254 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 ATP5SQ99766 215 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 C20orf144Q9BQM9 153 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 PRELID1Q9Y255 219 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 TIMM9Q9Y5J7 89 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 DNAH10Q8IVF4 4471 aa8.5□□□□□ -1.05
SYNE1-221ENST00000472563 PLAC8L1A1L4L8 177 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 NPIPB6E9PJ23 425 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 C17orf112F2Z3M2 114 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 H7BYZ3 331 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 PYYP10082 97 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 RPL12P30050 165 aaKnown RBP8.49□□□□□ -1.05
SYNE1-221ENST00000472563 ZNF493Q6ZR52 646 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 FAM167A-AS1Q96KT0 104 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 MRPL32Q9BYC8 188 aaKnown RBP8.49□□□□□ -1.05
SYNE1-221ENST00000472563 HSPB11Q9Y547 144 aa8.49□□□□□ -1.05
SYNE1-221ENST00000472563 DNAH6Q9C0G6 4158 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 M0R3E3 92 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 PTTG1O95997 202 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 P0DMU3 169 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 FAM231AP0DMU4 169 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 FAM231CP0DMU5 169 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 CT45A10P0DMU9 189 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 HTN3P15516 51 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 MIR17HGQ75NE6 70 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 C16orf74Q96GX8 76 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 SLC25A2Q9BXI2 301 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 PARD6GQ9BYG4 376 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-221ENST00000472563 FUT9Q9Y231 359 aa8.48□□□□□ -1.05
SYNE1-221ENST00000472563 IFNA5P01569 189 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 NBEAP1P0C6P0 100 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 LEPP41159 167 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 KIR3DS1Q14943 382 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 GFI1BQ5VTD9 330 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 POM121L12Q8N7R1 296 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 BLNKQ8WV28 456 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 LINC00477Q96M19 166 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 OR51M1Q9H341 326 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 MBD2Q9UBB5 411 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 ALG5Q9Y673 324 aa8.47□□□□□ -1.05
SYNE1-221ENST00000472563 DEFB130BP0DP73 79 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 DEFB130AP0DP74 79 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 HTN1P15515 57 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 EXOC3-AS1Q8N2X6 119 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 SCGB1C1Q8TD33 95 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 RNASE8Q8TDE3 154 aaKnown RBP8.46□□□□□ -1.06
SYNE1-221ENST00000472563 TMEM263Q8WUH6 116 aaKnown RBP8.46□□□□□ -1.06
SYNE1-221ENST00000472563 FXYD5Q96DB9 178 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 PAXXQ9BUH6 204 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 AAMDCQ9H7C9 122 aa8.46□□□□□ -1.06
SYNE1-221ENST00000472563 TIMM8BQ9Y5J9 83 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-221ENST00000472563 CBY3A6NI87 242 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 ERCC8Q13216 396 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 ICAM4Q14773 271 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 TMEM88Q6PEY1 159 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 C9orf47Q6ZRZ4 202 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 CCDC28AQ8IWP9 274 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 RNF141Q8WVD5 230 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 FAM19A4Q96LR4 140 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 SMIM3Q9BZL3 60 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 AGPAT4-IT1Q9H0P7 198 aa8.45□□□□□ -1.06
SYNE1-221ENST00000472563 TRAV12-3A0A0B4J271 114 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 SLC25A5P05141 298 aaKnown RBP8.44□□□□□ -1.06
SYNE1-221ENST00000472563 ATP5G1P05496 136 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 NMBP08949 121 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 OR10J4P0C629 311 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 CRISP2P16562 243 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 ATP5G3P48201 142 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 FCN2Q15485 313 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 FFAR4Q5NUL3 377 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 LYPD1Q8N2G4 141 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 PYGO2Q9BRQ0 406 aa8.44□□□□□ -1.06
SYNE1-221ENST00000472563 WFDC1Q9HC57 220 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms