RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TMEM88Q6PEY1 159 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 LINC00336Q6ZUF6 198 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 TMEM256Q8N2U0 113 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 OR10J6PQ8NGY7 276 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 PARD6GQ9BYG4 376 aaPredicted RBP11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 SLC39A9Q9NUM3 307 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 A0A1B0GVY2 172 aa11.12□□□□□ -0.63
CCDC88B-205ENST00000472524 M0R2N4 97 aa11.12□□□□□ -0.63
CCDC88B-205ENST00000472524 TSPOP30536 169 aa11.12□□□□□ -0.63
CCDC88B-205ENST00000472524 FCN2Q15485 313 aa11.12□□□□□ -0.63
CCDC88B-205ENST00000472524 SAT2Q96F10 170 aaPredicted RBP11.12□□□□□ -0.63
CCDC88B-205ENST00000472524 PLAC8L1A1L4L8 177 aa11.11□□□□□ -0.63
CCDC88B-205ENST00000472524 TAS2R60P59551 318 aa11.11□□□□□ -0.63
CCDC88B-205ENST00000472524 KIR3DS1Q14943 382 aa11.11□□□□□ -0.63
CCDC88B-205ENST00000472524 ATP6V1FQ16864 119 aa11.11□□□□□ -0.63
CCDC88B-205ENST00000472524 LRRC37A5PQ49AS3 106 aa11.11□□□□□ -0.63
CCDC88B-205ENST00000472524 IGLV2-18A0A075B6J9 118 aa11.1□□□□□ -0.63
CCDC88B-205ENST00000472524 J3KRW8 73 aa11.1□□□□□ -0.63
CCDC88B-205ENST00000472524 IFITM3Q01628 133 aa11.1□□□□□ -0.63
CCDC88B-205ENST00000472524 NHLH2Q02577 135 aa11.1□□□□□ -0.63
CCDC88B-205ENST00000472524 GUK1Q16774 197 aa11.1□□□□□ -0.63
CCDC88B-205ENST00000472524 C16orf74Q96GX8 76 aa11.1□□□□□ -0.63
CCDC88B-205ENST00000472524 ZNF586Q9NXT0 402 aa11.1□□□□□ -0.63
CCDC88B-205ENST00000472524 A6NHS1 94 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 RLN2P04090 185 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 GCSAMLQ5JQS6 135 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 GFI1BQ5VTD9 330 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 OR5C1Q8NGR4 320 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 THAP6Q8TBB0 222 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 NPCDR1Q9BY65 106 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 PTTG2Q9NZH5 202 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 OR5AC2Q9NZP5 309 aa11.09□□□□□ -0.63
CCDC88B-205ENST00000472524 E5RGE8 158 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 F5H768 121 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 INMT-MINDY4F8WBC2 141 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 H7BYZ3 331 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 RTL8CO15255 209 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 PRAF2O60831 178 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 MPDU1O75352 247 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 PYYP10082 97 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 CLINT1Q14677 625 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 C15orf53Q8NAA6 179 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 TMEM263Q8WUH6 116 aaKnown RBP11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 CHAC2Q8WUX2 184 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 C20orf144Q9BQM9 153 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 NMES1Q9C002 83 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 SLC25A31Q9H0C2 315 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 NOP10Q9NPE3 64 aaKnown RBP11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 TIMM8BQ9Y5J9 83 aaPredicted RBP11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 PKHD1P08F94 4074 aa11.08□□□□□ -0.64
CCDC88B-205ENST00000472524 TRBV19A0A075B6N1 114 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 PRSS29PA6NIE9 313 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 M0R3E3 92 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 ZNF253O75346 499 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 CT45A10P0DMU9 189 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 RNASE8Q8TDE3 154 aaKnown RBP11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 BLNKQ8WV28 456 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 TMEM14CQ9P0S9 112 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 TIMM9Q9Y5J7 89 aa11.07□□□□□ -0.64
CCDC88B-205ENST00000472524 NPIPB6E9PJ23 425 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 H0YIZ8 118 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 ATP5G1P05496 136 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 HIST1H1EP10412 219 aaKnown RBP11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 LEPP41159 167 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 ATP5G3P48201 142 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 ZNF493Q6ZR52 646 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 CCDC28AQ8IWP9 274 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 RYR1P21817 5038 aa11.06□□□□□ -0.64
CCDC88B-205ENST00000472524 TRAV12-3A0A0B4J271 114 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 CBY3A6NI87 242 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 NDUFB4O95168 129 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 NUDT3O95989 172 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 MED14OSP0DP75 135 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 CYCSP99999 105 aaKnown RBP11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 ERCC8Q13216 396 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 LGALS9BQ3B8N2 356 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 RNF212Q495C1 297 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 MIR17HGQ75NE6 70 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 MRPL53Q96EL3 112 aaKnown RBP11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 ODF3Q96PU9 254 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 ATG101Q9BSB4 218 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 SLC25A2Q9BXI2 301 aa11.05□□□□□ -0.64
CCDC88B-205ENST00000472524 DYNC1H1Q14204 4646 aaKnown RBP11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 SSNA1O43805 119 aa11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 H2BFSP57053 126 aa11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 EXOC3-AS1Q8N2X6 119 aa11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 PPP1R1CQ8WVI7 109 aa11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 MARVELD1Q9BSK0 173 aa11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 WDR61Q9GZS3 305 aaKnown RBP11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 PRELID1Q9Y255 219 aa11.04□□□□□ -0.64
CCDC88B-205ENST00000472524 DNAH11Q96DT5 4516 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 SNURFLB1AK76 121 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 DEFA1P59665 94 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 DEFA3P59666 94 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 PDE6HQ13956 83 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 FAM167A-AS1Q96KT0 104 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 AAMDCQ9H7C9 122 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 KCNIP2Q9NS61 270 aa11.03□□□□□ -0.64
CCDC88B-205ENST00000472524 MUC4Q99102 2169 aa11.02□□□□□ -0.65
CCDC88B-205ENST00000472524 ICAM4Q14773 271 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms