RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 GP9P14770 177 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 TAS2R60P59551 318 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 THAP8Q8NA92 274 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 OR4B1Q8NGF8 309 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 METTL26Q96S19 204 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 NRN1Q9NPD7 142 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 IZUMO1RA6ND01 250 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 EVI2AP22794 236 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 KRTAP10-9P60411 292 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 HIST1H1AQ02539 215 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 MAJINQ3KP22 176 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 NDFIP1Q9BT67 221 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 SHANK2-AS3Q9BTD1 123 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 AGRNO00468 2067 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 IGHV4-59P01825 116 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 FAM71F2Q6NXP2 309 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 DTX2Q86UW9 622 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 HLA-DQA1P01909 254 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 GRAMD2BQ96HH9 432 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 TRBV19A0A075B6N1 114 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 CTSGP08311 255 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 OTORQ9NRC9 128 aa10.74□□□□□ -0.69
CCDC88A-211ENST00000471947 HBBP68871 147 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 TMEM136Q6ZRR5 245 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 LY6G5BQ8NDX9 201 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 SIRPDQ9H106 197 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 GCN1Q92616 2671 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 OVOL3O00110 214 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 AVPP01185 164 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 Q86TA4 180 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 C11orf52Q96A22 123 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 LY6LH3BQJ8 138 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 CD99P14209 185 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 Q6ZWC4 215 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 FA2HQ7L5A8 372 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 EEF1AKMT3Q96AZ1 226 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 TP73-AS1Q9UF72 201 aa10.73□□□□□ -0.69
CCDC88A-211ENST00000471947 M0R381 172 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 CRYGBP07316 175 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 TMEM183BQ1AE95 376 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 Q6ZQT7 251 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 IGHV1-69DA0A0B4J2H0 117 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 IGHV1-69P01742 117 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 MSMBP08118 114 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 TM4SF20Q53R12 229 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 PVRIGQ6DKI7 326 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 TSKUQ8WUA8 353 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 KCNS1Q96KK3 526 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 PSMB11A5LHX3 300 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 LYZL1Q6UWQ5 148 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 S100A7AQ86SG5 101 aa10.72□□□□□ -0.69
CCDC88A-211ENST00000471947 JOSD1Q15040 202 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 GDF5OSQ5U4N7 250 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 AMN1Q8IY45 258 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 GTSF1Q8WW33 167 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 MSRB1Q9NZV6 116 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 FNDC10F2Z333 226 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 TOMM40O96008 361 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 IGF2BP2-AS1Q96M15 143 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 PYGO2Q9BRQ0 406 aa10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 KLF2Q9Y5W3 355 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-211ENST00000471947 IGLV11-55A0A075B6I3 123 aa10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 TRAV30A0A087WSZ9 112 aa10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 DEFB136Q30KP8 78 aa10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 TMEM78Q5T7P6 136 aa10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 MINOS1Q5TGZ0 78 aa10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 WIPF2Q8TF74 440 aaPredicted RBP10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 FMC1Q96HJ9 113 aa10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 MINOS1-NBL1R4GNA1 71 aa10.71□□□□□ -0.7
CCDC88A-211ENST00000471947 PAX1P15863 534 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 PKIAP61925 76 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 PAX8Q06710 450 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 UNQ9165/PRO28630Q6UXU0 137 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 LINC00173Q6ZV60 143 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 ZNF414Q96IQ9 312 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 PRDM13Q9H4Q3 707 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 RNF114Q9Y508 228 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 VWC2LB2RUY7 222 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 CRYGCP07315 174 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 NIT1Q86X76 327 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 A0A1B0GUT8 65 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 MGPP08493 103 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 EDN2P20800 178 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 DEFB112Q30KQ8 113 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 Q6ZN92 141 aa10.7□□□□□ -0.7
CCDC88A-211ENST00000471947 VPS13CQ709C8 3753 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 SH2D1AO60880 128 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 CKS2P33552 79 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 RBPMS2Q6ZRY4 209 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 C8orf31Q8N9H6 132 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 MOB4Q9Y3A3 225 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 A0A1W2PS18 150 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 H3BRN7 92 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 SPANXN1Q5VSR9 72 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 OR4X2Q8NGF9 303 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 ODF3BA8MYP8 253 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 OR5AL1P0C617 328 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 ZNF688P0C7X2 276 aa10.69□□□□□ -0.7
CCDC88A-211ENST00000471947 SPATA45Q537H7 98 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms