RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C2orf70A6NJV1 201 aa14.85□□□□□ -0.03
VIM-203ENST00000469543 TRAV30A0A087WSZ9 112 aa14.85□□□□□ -0.03
VIM-203ENST00000469543 ZNF207O43670 478 aaKnown RBP14.85□□□□□ -0.03
VIM-203ENST00000469543 IGHG4P01861 327 aa14.85□□□□□ -0.03
VIM-203ENST00000469543 BRD3OSQ6XYD6 125 aa14.85□□□□□ -0.03
VIM-203ENST00000469543 AAMDCQ9H7C9 122 aa14.85□□□□□ -0.03
VIM-203ENST00000469543 FAM208BQ5VWN6 2430 aa14.84□□□□□ -0.03
VIM-203ENST00000469543 LOC102724200A0A096LPH7 203 aaPredicted RBP14.84□□□□□ -0.03
VIM-203ENST00000469543 MINOS1Q5TGZ0 78 aa14.84□□□□□ -0.03
VIM-203ENST00000469543 GFRA4Q9GZZ7 299 aa14.84□□□□□ -0.03
VIM-203ENST00000469543 THYN1Q9P016 225 aa14.84□□□□□ -0.03
VIM-203ENST00000469543 MINOS1-NBL1R4GNA1 71 aa14.84□□□□□ -0.03
VIM-203ENST00000469543 NUTF2P61970 127 aaKnown RBP14.84□□□□□ -0.03
VIM-203ENST00000469543 RHOGP84095 191 aa14.84□□□□□ -0.03
VIM-203ENST00000469543 ZFP30Q9Y2G7 519 aa14.84□□□□□ -0.03
VIM-203ENST00000469543 G0S2P27469 103 aa14.83□□□□□ -0.03
VIM-203ENST00000469543 UBE2E1P51965 193 aa14.83□□□□□ -0.03
VIM-203ENST00000469543 C16orf54Q6UWD8 224 aa14.83□□□□□ -0.03
VIM-203ENST00000469543 RNF182Q8N6D2 247 aa14.83□□□□□ -0.03
VIM-203ENST00000469543 IGHV1-24A0A0C4DH33 117 aa14.83□□□□□ -0.04
VIM-203ENST00000469543 H0Y8G0 127 aa14.83□□□□□ -0.04
VIM-203ENST00000469543 K7EQM0 130 aa14.83□□□□□ -0.04
VIM-203ENST00000469543 ZNF80P51504 273 aaPredicted RBP14.83□□□□□ -0.04
VIM-203ENST00000469543 CLEC19AQ6UXS0 136 aa14.83□□□□□ -0.04
VIM-203ENST00000469543 A0A1B0GUT8 65 aa14.82□□□□□ -0.04
VIM-203ENST00000469543 CENPVL3A0A0U1RRI6 287 aa14.82□□□□□ -0.04
VIM-203ENST00000469543 TMEM213A2RRL7 107 aa14.82□□□□□ -0.04
VIM-203ENST00000469543 LYPD1Q8N2G4 141 aa14.82□□□□□ -0.04
VIM-203ENST00000469543 DOPEY1Q5JWR5 2465 aa14.82□□□□□ -0.04
VIM-203ENST00000469543 HAX1O00165 279 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 IGHV4-39P01824 125 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 TFPI2P48307 235 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 LBHQ53QV2 105 aaPredicted RBP14.81□□□□□ -0.04
VIM-203ENST00000469543 LRRK2Q5S007 2527 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 PRAC2D3DTV9 90 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 LINC00614P0C842 121 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 RELQ04864 619 aaPredicted RBP14.81□□□□□ -0.04
VIM-203ENST00000469543 ERCC8Q13216 396 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 FAM106AQ4KMX7 169 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 OR4B1Q8NGF8 309 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 RABAC1Q9UI14 185 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 RNF24Q9Y225 148 aa14.81□□□□□ -0.04
VIM-203ENST00000469543 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.8□□□□□ -0.04
VIM-203ENST00000469543 BTF3P20290 206 aaKnown RBP14.8□□□□□ -0.04
VIM-203ENST00000469543 PRORYQ9H606 182 aa14.8□□□□□ -0.04
VIM-203ENST00000469543 TCAPO15273 167 aa14.8□□□□□ -0.04
VIM-203ENST00000469543 LYZL1Q6UWQ5 148 aa14.8□□□□□ -0.04
VIM-203ENST00000469543 PMCHL2Q9BQD1 86 aa14.8□□□□□ -0.04
VIM-203ENST00000469543 SERTM2A0A1B0GWG4 89 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 OOSP1A8MZH6 123 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 SH2D1AO60880 128 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 IGLC3P0DOY3 106 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 CCDC140Q96MF4 163 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 FAM231BA6NCW3 169 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 FXYD7P58549 80 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 ZNF502Q8TBZ5 544 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 ZNF48Q96MX3 618 aaPredicted RBP14.79□□□□□ -0.04
VIM-203ENST00000469543 NPFFO15130 113 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 CT45A10P0DMU9 189 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 RPL7P18124 248 aaKnown RBP14.79□□□□□ -0.04
VIM-203ENST00000469543 CSN1S1P47710 185 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 ZNF575Q86XF7 245 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 PRR25Q96S07 402 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 SELENOKQ9Y6D0 94 aa14.79□□□□□ -0.04
VIM-203ENST00000469543 IGLL1P15814 213 aa14.78□□□□□ -0.04
VIM-203ENST00000469543 NDFIP1Q9BT67 221 aa14.78□□□□□ -0.04
VIM-203ENST00000469543 FBN2P35556 2912 aa14.78□□□□□ -0.04
VIM-203ENST00000469543 LOC389332A0A1B0GUA5 103 aa14.78□□□□□ -0.04
VIM-203ENST00000469543 PDE6HQ13956 83 aa14.78□□□□□ -0.04
VIM-203ENST00000469543 Q6ZN92 141 aa14.78□□□□□ -0.04
VIM-203ENST00000469543 TXN2Q99757 166 aa14.77□□□□□ -0.04
VIM-203ENST00000469543 TRBV6-1A0A0K0K1D8 114 aa14.77□□□□□ -0.05
VIM-203ENST00000469543 CLPSL1A2RUU4 121 aa14.77□□□□□ -0.05
VIM-203ENST00000469543 AMN1Q8IY45 258 aa14.77□□□□□ -0.05
VIM-203ENST00000469543 TMEM189A5PLL7 270 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 LEPROTL1O95214 131 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 Q6ZQT7 251 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 ZFAND3Q9H8U3 227 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 MSRB1Q9NZV6 116 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 DOPEY2Q9Y3R5 2298 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 IGHV4-61A0A0C4DH41 118 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 BUB3O43684 328 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 PPIFP30405 207 aaKnown RBP14.76□□□□□ -0.05
VIM-203ENST00000469543 LOXL1Q08397 574 aaPredicted RBP14.76□□□□□ -0.05
VIM-203ENST00000469543 FAM110DQ8TAY7 271 aaPredicted RBP14.76□□□□□ -0.05
VIM-203ENST00000469543 TMEM70Q9BUB7 260 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 MXRA5Q9NR99 2828 aa14.76□□□□□ -0.05
VIM-203ENST00000469543 PSG9Q00887 426 aa14.75□□□□□ -0.05
VIM-203ENST00000469543 ZNF462Q96JM2 2506 aa14.75□□□□□ -0.05
VIM-203ENST00000469543 hDV102S1A0JD36 115 aa14.75□□□□□ -0.05
VIM-203ENST00000469543 ABCA12Q86UK0 2595 aa14.75□□□□□ -0.05
VIM-203ENST00000469543 TRAV40A0A0B4J280 105 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 SMKR1H3BMG3 65 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 LY6EQ16553 131 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 FAM162BQ5T6X4 162 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 RIGQ13278 110 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 C5orf56Q8N8D9 126 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 PIFOQ8TCI5 191 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 NRGNQ92686 78 aa14.74□□□□□ -0.05
VIM-203ENST00000469543 D6R8Y8 96 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms