RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 VWC2Q2TAL6 325 aa11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 MIC13Q5XKP0 118 aa11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 OR1L4Q8NGR5 311 aa11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 RNASE8Q8TDE3 154 aaKnown RBP11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 TMEM263Q8WUH6 116 aaKnown RBP11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 SAT2Q96F10 170 aaPredicted RBP11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 ATG101Q9BSB4 218 aa11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 PRAC2D3DTV9 90 aa11.63□□□□□ -0.55
CCDC28B-204ENST00000469003 H3BQ15 152 aa11.63□□□□□ -0.55
CCDC28B-204ENST00000469003 GUK1Q16774 197 aa11.63□□□□□ -0.55
CCDC28B-204ENST00000469003 C1orf134Q5TEV5 83 aa11.63□□□□□ -0.55
CCDC28B-204ENST00000469003 PFDN5Q99471 154 aa11.63□□□□□ -0.55
CCDC28B-204ENST00000469003 CCDC32Q9BV29 185 aa11.63□□□□□ -0.55
CCDC28B-204ENST00000469003 TRAV5A0A0B4J249 113 aa11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 H2AFB2P0C5Z0 115 aa11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 S100A11P31949 105 aa11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 RPL29P47914 159 aaKnown RBP11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 SULT1A1P50225 295 aa11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 KIR3DS1Q14943 382 aa11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 PARD6GQ9BYG4 376 aaPredicted RBP11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 NOP10Q9NPE3 64 aaKnown RBP11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 LYRM2Q9NU23 88 aaPredicted RBP11.62□□□□□ -0.55
CCDC28B-204ENST00000469003 DYNC1H1Q14204 4646 aaKnown RBP11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 IGSF23A1L1A6 192 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 NUDT3O95989 172 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 S100A10P60903 97 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 IL15RAQ13261 267 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 GFI1BQ5VTD9 330 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 TMEM252Q8N6L7 170 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 CHAC2Q8WUX2 184 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 ODF3Q96PU9 254 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 SLC39A9Q9NUM3 307 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 PKD1P98161 4303 aa11.61□□□□□ -0.55
CCDC28B-204ENST00000469003 DNAH11Q96DT5 4516 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 UBE2L5PA0A1B0GUS4 154 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 ZNF253O75346 499 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 HBG1P69891 147 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 HBG2P69892 147 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 BAXQ07812 192 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 RAB32Q13637 225 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 STX12Q86Y82 276 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 CCDC28AQ8IWP9 274 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 ZNF586Q9NXT0 402 aa11.6□□□□□ -0.55
CCDC28B-204ENST00000469003 FAM240BA0A1B0GVZ2 78 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 NPIPB6E9PJ23 425 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 CT45A10P0DMU9 189 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 LEPP41159 167 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 CCL18P55774 89 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 LINC00612Q8N6U2 182 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 ZNRF2Q8NHG8 242 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 RNF141Q8WVD5 230 aa11.59□□□□□ -0.55
CCDC28B-204ENST00000469003 FGF7P21781 194 aa11.58□□□□□ -0.56
CCDC28B-204ENST00000469003 ATP6V1FQ16864 119 aa11.58□□□□□ -0.56
CCDC28B-204ENST00000469003 MZT2BQ6NZ67 158 aa11.58□□□□□ -0.56
CCDC28B-204ENST00000469003 MRPL53Q96EL3 112 aaKnown RBP11.58□□□□□ -0.56
CCDC28B-204ENST00000469003 TMEM14CQ9P0S9 112 aa11.58□□□□□ -0.56
CCDC28B-204ENST00000469003 TRBV19A0A075B6N1 114 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 NBDYA0A0U1RRE5 68 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 SNURFLB1AK76 121 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 J3KRW8 73 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 MPDU1O75352 247 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 LINC00299Q6ZSB3 139 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 PYGO2Q9BRQ0 406 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 GPN1Q9HCN4 374 aaPredicted RBP11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 LINC00588Q9Y4M8 146 aa11.57□□□□□ -0.56
CCDC28B-204ENST00000469003 TRAV12-3A0A0B4J271 114 aa11.56□□□□□ -0.56
CCDC28B-204ENST00000469003 RLN2P04090 185 aa11.56□□□□□ -0.56
CCDC28B-204ENST00000469003 HIST1H1EP10412 219 aaKnown RBP11.56□□□□□ -0.56
CCDC28B-204ENST00000469003 CLINT1Q14677 625 aa11.56□□□□□ -0.56
CCDC28B-204ENST00000469003 PRELID1Q9Y255 219 aa11.56□□□□□ -0.56
CCDC28B-204ENST00000469003 GAGE12BA1L429 117 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 M0R3E3 92 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 GAGE7O76087 117 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 NDUFB4O95168 129 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 GAGE12FP0CL80 117 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 GAGE12GP0CL81 117 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 GAGE12IP0CL82 117 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 ASAH1Q13510 395 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 OR5I1Q13606 314 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 PDE6HQ13956 83 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 S100ZQ8WXG8 99 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 GNPNAT1Q96EK6 184 aaPredicted RBP11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 NPCDR1Q9BY65 106 aa11.55□□□□□ -0.56
CCDC28B-204ENST00000469003 TRAV26-1A0A087WT03 109 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 SLC25A5P05141 298 aaKnown RBP11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 PYYP10082 97 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 M6PRP20645 277 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 DAZ2Q13117 558 aaKnown RBP11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 SSX7Q7RTT5 188 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 C6orf223Q8N319 242 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 RXFP4Q8TDU9 374 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 ZNF503Q96F45 646 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 LINC00477Q96M19 166 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 TIMM9Q9Y5J7 89 aa11.54□□□□□ -0.56
CCDC28B-204ENST00000469003 C7orf71A4D174 169 aa11.53□□□□□ -0.56
CCDC28B-204ENST00000469003 HOXA5P20719 270 aa11.53□□□□□ -0.56
CCDC28B-204ENST00000469003 NHLH2Q02577 135 aa11.53□□□□□ -0.56
CCDC28B-204ENST00000469003 ERCC8Q13216 396 aa11.53□□□□□ -0.56
CCDC28B-204ENST00000469003 ZNF575Q86XF7 245 aa11.53□□□□□ -0.56
CCDC28B-204ENST00000469003 FAM19A4Q96LR4 140 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms