RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 H3BQ15 152 aa13.39□□□□□ -0.27
COL9A3-206ENST00000466532 LYRM1O43325 122 aa13.39□□□□□ -0.27
COL9A3-206ENST00000466532 CST7O76096 145 aa13.39□□□□□ -0.27
COL9A3-206ENST00000466532 MIC13Q5XKP0 118 aa13.39□□□□□ -0.27
COL9A3-206ENST00000466532 DNAJC4Q9NNZ3 241 aa13.39□□□□□ -0.27
COL9A3-206ENST00000466532 LINC00588Q9Y4M8 146 aa13.39□□□□□ -0.27
COL9A3-206ENST00000466532 TRAV6A0A075B6T7 132 aa13.38□□□□□ -0.27
COL9A3-206ENST00000466532 C5orf51A6NDU8 294 aa13.38□□□□□ -0.27
COL9A3-206ENST00000466532 FAM24AA6NFZ4 105 aa13.38□□□□□ -0.27
COL9A3-206ENST00000466532 TCRBP04435 133 aa13.38□□□□□ -0.27
COL9A3-206ENST00000466532 CLINT1Q14677 625 aa13.38□□□□□ -0.27
COL9A3-206ENST00000466532 CCDC28AQ8IWP9 274 aa13.38□□□□□ -0.27
COL9A3-206ENST00000466532 SAT2Q96F10 170 aaPredicted RBP13.38□□□□□ -0.27
COL9A3-206ENST00000466532 SEC22CQ9BRL7 303 aa13.38□□□□□ -0.27
COL9A3-206ENST00000466532 TRAV5A0A0B4J249 113 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 J3KRW8 73 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 TNP2Q05952 138 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 OR5I1Q13606 314 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 C6orf223Q8N319 242 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 OR1L4Q8NGR5 311 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 ZNF431Q8TF32 576 aaPredicted RBP13.37□□□□□ -0.27
COL9A3-206ENST00000466532 C11orf1Q9H5F2 150 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 UQCC1Q9NVA1 299 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 WDR83OSQ9Y284 106 aa13.37□□□□□ -0.27
COL9A3-206ENST00000466532 PVALBP20472 110 aaPredicted RBP13.36□□□□□ -0.27
COL9A3-206ENST00000466532 GUK1Q16774 197 aa13.36□□□□□ -0.27
COL9A3-206ENST00000466532 SSX7Q7RTT5 188 aa13.36□□□□□ -0.27
COL9A3-206ENST00000466532 LINC00612Q8N6U2 182 aa13.36□□□□□ -0.27
COL9A3-206ENST00000466532 C2orf50Q96LR7 162 aa13.36□□□□□ -0.27
COL9A3-206ENST00000466532 PFDN5Q99471 154 aa13.36□□□□□ -0.27
COL9A3-206ENST00000466532 NUDT15Q9NV35 164 aa13.36□□□□□ -0.27
COL9A3-206ENST00000466532 ABCA13Q86UQ4 5058 aa13.36□□□□□ -0.27
COL9A3-206ENST00000466532 TRAV26-1A0A087WT03 109 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 TRAV12-3A0A0B4J271 114 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 UBE2L5PA0A1B0GUS4 154 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 SNURFLB1AK76 121 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 NPIPB6E9PJ23 425 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 RLN2P04090 185 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 CT45A10P0DMU9 189 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 LEPP41159 167 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 C12orf45Q8N5I9 185 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-206ENST00000466532 GNPNAT1Q96EK6 184 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-206ENST00000466532 ODF3Q96PU9 254 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 ZNF586Q9NXT0 402 aa13.35□□□□□ -0.27
COL9A3-206ENST00000466532 GAGE12BA1L429 117 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 GAGE7O76087 117 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 GAGE12FP0CL80 117 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 GAGE12GP0CL81 117 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 GAGE12IP0CL82 117 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 RPL29P47914 159 aaKnown RBP13.34□□□□□ -0.27
COL9A3-206ENST00000466532 SULT1A1P50225 295 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 S100A10P60903 97 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 BAXQ07812 192 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 VWC2Q2TAL6 325 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 LYRM2Q9NU23 88 aaPredicted RBP13.34□□□□□ -0.27
COL9A3-206ENST00000466532 SLC39A9Q9NUM3 307 aa13.34□□□□□ -0.27
COL9A3-206ENST00000466532 A0A0J9YY99 117 aa13.33□□□□□ -0.28
COL9A3-206ENST00000466532 ZNF253O75346 499 aa13.33□□□□□ -0.28
COL9A3-206ENST00000466532 M6PRP20645 277 aa13.33□□□□□ -0.28
COL9A3-206ENST00000466532 HOXA5P20719 270 aa13.33□□□□□ -0.28
COL9A3-206ENST00000466532 S100A11P31949 105 aa13.33□□□□□ -0.28
COL9A3-206ENST00000466532 RXFP4Q8TDU9 374 aa13.33□□□□□ -0.28
COL9A3-206ENST00000466532 IGSF23A1L1A6 192 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 H2AFB2P0C5Z0 115 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 HBG1P69891 147 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 HBG2P69892 147 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 STX12Q86Y82 276 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 TMEM252Q8N6L7 170 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 ZNF503Q96F45 646 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 PYGO2Q9BRQ0 406 aa13.32□□□□□ -0.28
COL9A3-206ENST00000466532 TRBV19A0A075B6N1 114 aa13.31□□□□□ -0.28
COL9A3-206ENST00000466532 C16orf90A8MZG2 172 aa13.31□□□□□ -0.28
COL9A3-206ENST00000466532 M0R3E3 92 aa13.31□□□□□ -0.28
COL9A3-206ENST00000466532 FGF7P21781 194 aa13.31□□□□□ -0.28
COL9A3-206ENST00000466532 RAB32Q13637 225 aa13.31□□□□□ -0.28
COL9A3-206ENST00000466532 Q9H8V8 135 aa13.31□□□□□ -0.28
COL9A3-206ENST00000466532 SLC25A5P05141 298 aaKnown RBP13.3□□□□□ -0.28
COL9A3-206ENST00000466532 ERCC8Q13216 396 aa13.3□□□□□ -0.28
COL9A3-206ENST00000466532 MRPL53Q96EL3 112 aaKnown RBP13.3□□□□□ -0.28
COL9A3-206ENST00000466532 TMEM14CQ9P0S9 112 aa13.3□□□□□ -0.28
COL9A3-206ENST00000466532 HSPG2P98160 4391 aa13.3□□□□□ -0.28
COL9A3-206ENST00000466532 LRP1BQ9NZR2 4599 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 DAZ2Q13117 558 aaKnown RBP13.29□□□□□ -0.28
COL9A3-206ENST00000466532 IL15RAQ13261 267 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 ATP6V1FQ16864 119 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 Q6ZTI0 123 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 CHAC2Q8WUX2 184 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 CCDC32Q9BV29 185 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 TMPRSS5Q9H3S3 457 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 GPN1Q9HCN4 374 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-206ENST00000466532 TIMM9Q9Y5J7 89 aa13.29□□□□□ -0.28
COL9A3-206ENST00000466532 FAM240BA0A1B0GVZ2 78 aa13.28□□□□□ -0.28
COL9A3-206ENST00000466532 C7orf71A4D174 169 aa13.28□□□□□ -0.28
COL9A3-206ENST00000466532 H3BNG1 76 aa13.28□□□□□ -0.28
COL9A3-206ENST00000466532 NDUFB4O95168 129 aa13.28□□□□□ -0.28
COL9A3-206ENST00000466532 PYYP10082 97 aa13.28□□□□□ -0.28
COL9A3-206ENST00000466532 HIST1H1EP10412 219 aaKnown RBP13.28□□□□□ -0.28
COL9A3-206ENST00000466532 ESRGQ1W209 222 aa13.28□□□□□ -0.28
COL9A3-206ENST00000466532 TTC32Q5I0X7 151 aa13.28□□□□□ -0.28
COL9A3-206ENST00000466532 PRELID1Q9Y255 219 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms