RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 GSKIPQ9P0R6 139 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 RNF24Q9Y225 148 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 C7orf66A4D0T2 115 aa11.18□□□□□ -0.62
COL7A1-204ENST00000462475 H3BQ15 152 aa11.18□□□□□ -0.62
COL7A1-204ENST00000462475 MBPP02686 304 aaPredicted RBP11.18□□□□□ -0.62
COL7A1-204ENST00000462475 IGLC2P0DOY2 106 aa11.18□□□□□ -0.62
COL7A1-204ENST00000462475 HOXA5P20719 270 aa11.18□□□□□ -0.62
COL7A1-204ENST00000462475 GNPNAT1Q96EK6 184 aaPredicted RBP11.18□□□□□ -0.62
COL7A1-204ENST00000462475 SDHCQ99643 169 aaPredicted RBP11.18□□□□□ -0.62
COL7A1-204ENST00000462475 Q9H8V8 135 aa11.18□□□□□ -0.62
COL7A1-204ENST00000462475 A0A0J9YY99 117 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 GAGE12BA1L429 117 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 J3KRW8 73 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 GAGE7O76087 117 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 GAGE12FP0CL80 117 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 GAGE12GP0CL81 117 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 GAGE12IP0CL82 117 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 M6PRP20645 277 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 IFITM3Q01628 133 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 MAPKAPK5-AS1Q8N8E1 139 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 RXFP4Q8TDU9 374 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 MITD1Q8WV92 249 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 GGACTQ9BVM4 153 aa11.17□□□□□ -0.62
COL7A1-204ENST00000462475 CCSO14618 274 aa11.16□□□□□ -0.62
COL7A1-204ENST00000462475 CT45A10P0DMU9 189 aa11.16□□□□□ -0.62
COL7A1-204ENST00000462475 RGS21Q2M5E4 152 aa11.16□□□□□ -0.62
COL7A1-204ENST00000462475 C10orf113Q5VZT2 155 aa11.16□□□□□ -0.62
COL7A1-204ENST00000462475 CCDC28AQ8IWP9 274 aa11.16□□□□□ -0.62
COL7A1-204ENST00000462475 SAT2Q96F10 170 aaPredicted RBP11.16□□□□□ -0.62
COL7A1-204ENST00000462475 PXMP4Q9Y6I8 212 aa11.16□□□□□ -0.62
COL7A1-204ENST00000462475 TRAV5A0A0B4J249 113 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 RLN2P04090 185 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 CAMLGP49069 296 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 TTC32Q5I0X7 151 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 SPATA12Q7Z6I5 190 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 ZNF503Q96F45 646 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 Q9H3A6 140 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 TMPRSS5Q9H3S3 457 aa11.15□□□□□ -0.62
COL7A1-204ENST00000462475 TRAV12-3A0A0B4J271 114 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 SNURFLB1AK76 121 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 NPIPB6E9PJ23 425 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 IL7P13232 177 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 DEFA1P59665 94 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 DEFA3P59666 94 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 ESRGQ1W209 222 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 MIC13Q5XKP0 118 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 ODF3Q96PU9 254 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 UPK3BQ9BT76 320 aa11.14□□□□□ -0.63
COL7A1-204ENST00000462475 LSM5Q9Y4Y9 91 aaKnown RBP11.14□□□□□ -0.63
COL7A1-204ENST00000462475 CENPXA8MT69 81 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 L7N2F9 121 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 LEPP41159 167 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 VAMP2P63027 116 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 Q6ZTI0 123 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 NRARPQ7Z6K4 114 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 ZNF431Q8TF32 576 aaPredicted RBP11.13□□□□□ -0.63
COL7A1-204ENST00000462475 C20orf85Q9H1P6 137 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 DNAJC4Q9NNZ3 241 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 ZNF586Q9NXT0 402 aa11.13□□□□□ -0.63
COL7A1-204ENST00000462475 MRPS16Q9Y3D3 137 aaKnown RBP11.13□□□□□ -0.63
COL7A1-204ENST00000462475 CST7O76096 145 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 BCAP31P51572 246 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 CAV2P51636 162 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 KRTAP10-2P60368 255 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 Q6ZRG5 221 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 PYGO2Q9BRQ0 406 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 C11orf1Q9H5F2 150 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 WDR83OSQ9Y284 106 aa11.12□□□□□ -0.63
COL7A1-204ENST00000462475 FAM24AA6NFZ4 105 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 FAM25EA8MYX2 175 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 H3BNG1 76 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 M0R3E3 92 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 DAZ2Q13117 558 aaKnown RBP11.11□□□□□ -0.63
COL7A1-204ENST00000462475 RAB31Q13636 194 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 GUK1Q16774 197 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 Q6ZNX1 250 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 UQCC1Q9NVA1 299 aa11.11□□□□□ -0.63
COL7A1-204ENST00000462475 UBE2L5PA0A1B0GUS4 154 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 PTTG1O95997 202 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 ERCC8Q13216 396 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 C11orf72Q8NBR9 251 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 OR1L4Q8NGR5 311 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 VSIG2Q96IQ7 327 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 GSN-AS1Q9NRJ2 163 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 SLC39A9Q9NUM3 307 aa11.1□□□□□ -0.63
COL7A1-204ENST00000462475 TRBV19A0A075B6N1 114 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 A0A096LPF7 62 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 A0A1W2PPQ1 181 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 C7orf71A4D174 169 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 PLA2G10O15496 165 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 ZNF253O75346 499 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 SLC25A5P05141 298 aaKnown RBP11.09□□□□□ -0.63
COL7A1-204ENST00000462475 BTN1A1Q13410 526 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 VWC2Q2TAL6 325 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 Q8N1X5 172 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 MRPL53Q96EL3 112 aaKnown RBP11.09□□□□□ -0.63
COL7A1-204ENST00000462475 PFDN5Q99471 154 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 SEC22CQ9BRL7 303 aa11.09□□□□□ -0.63
COL7A1-204ENST00000462475 TRGV2A0A075B6R0 118 aa11.08□□□□□ -0.64
COL7A1-204ENST00000462475 A0A1B0GVG6 124 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms