RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-215ENST00000460912 CNFNQ9BYD5 112 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 OTOGQ6ZRI0 2925 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 DIRC3C9JPN6 131 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 ZNF253O75346 499 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 NDUFB8O95169 186 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 PDE6HQ13956 83 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 MRPL54Q6P161 138 aaKnown RBP6.82□□□□□ -1.32
SYNE1-215ENST00000460912 CLPSL1A2RUU4 121 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 M0QZK8 103 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 C5orf64Q2M2E5 130 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 ZNF562Q6V9R5 426 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 CHRDL1Q9BU40 450 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 ZFAND3Q9H8U3 227 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 HIGD1AQ9Y241 93 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 A0A087X0K7 114 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 OOSP1A8MZH6 123 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 TCF24Q7RTU0 167 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 TRAV26-1A0A087WT03 109 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 SH2D7A6NKC9 451 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-215ENST00000460912 K7EQM0 130 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 PSG3Q16557 428 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 EXOC3-AS1Q8N2X6 119 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 Q8N9W7 124 aa6.81□□□□□ -1.32
SYNE1-215ENST00000460912 IGHV7-81A0A0B4J1V7 117 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 IGHV1-24A0A0C4DH33 117 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 ORM2P19652 201 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 HBBP68871 147 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 RBPMS2Q6ZRY4 209 aaKnown RBP6.8□□□□□ -1.32
SYNE1-215ENST00000460912 CHCHD1Q96BP2 118 aaKnown RBP6.8□□□□□ -1.32
SYNE1-215ENST00000460912 DPM3Q9P2X0 92 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 DOPEY2Q9Y3R5 2298 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 MYO18BQ8IUG5 2567 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 ARHGAP32A7KAX9 2087 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 CTSGP08311 255 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 AMMECR1LQ6DCA0 310 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 CIARTQ8N365 385 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-215ENST00000460912 SSBP4Q9BWG4 385 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-215ENST00000460912 DYNLRB1Q9NP97 96 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 THYN1Q9P016 225 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 ZNF462Q96JM2 2506 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 TRAV8-1A0A0A6YYK1 113 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 LY6HO94772 140 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 NEU4Q8WWR8 484 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-215ENST00000460912 ZFP30Q9Y2G7 519 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 U3KQE9 123 aa6.8□□□□□ -1.32
SYNE1-215ENST00000460912 TOX4O94842 621 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 KLRD1Q13241 179 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 MINOS1Q5TGZ0 78 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 MINOS1-NBL1R4GNA1 71 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 BRI3O95415 125 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 IGHV4-39P01824 125 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 SLC25A5P05141 298 aaKnown RBP6.79□□□□□ -1.32
SYNE1-215ENST00000460912 IGLC6P0CF74 106 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 OCIAD2Q56VL3 154 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 STPG4Q8N801 248 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 CST9LQ9H4G1 147 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 MED13LQ71F56 2210 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 HTR1DP28221 377 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 CKS1BP61024 79 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 SPATA45Q537H7 98 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 FAM19A2Q8N3H0 131 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 RNF125Q96EQ8 232 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 CSTL1Q9H114 145 aa6.79□□□□□ -1.32
SYNE1-215ENST00000460912 HLA-DRB1P01911 266 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 GPR6P46095 362 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-215ENST00000460912 AMTP48728 403 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 RAB9AP51151 201 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 KRTAP10-9P60411 292 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 KLF17Q5JT82 389 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-215ENST00000460912 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.78□□□□□ -1.32
SYNE1-215ENST00000460912 DEFB125Q8N687 156 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 SIGLECL1Q8N7X8 197 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 A8MWL6 223 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 LMO4P61968 165 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 HERV-K104P63124 156 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 LINC00173Q6ZV60 143 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 SMIM20Q8N5G0 67 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 PIFOQ8TCI5 191 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 MRPS16Q9Y3D3 137 aaKnown RBP6.78□□□□□ -1.32
SYNE1-215ENST00000460912 IGHV3-21A0A0B4J1V1 117 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 GAGE10A6NGK3 116 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 CD24P25063 80 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 Q56UQ5 140 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 VMO1Q7Z5L0 202 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 LRRC75A-AS1Q8N1F1 130 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 ZNF502Q8TBZ5 544 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 BLNKQ8WV28 456 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 RPEQ96AT9 228 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 RAB1BQ9H0U4 201 aa6.78□□□□□ -1.32
SYNE1-215ENST00000460912 APELAP0DMC3 54 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 CDKN1BP46527 198 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 MTURNQ8N3F0 131 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 C3orf56Q8N813 242 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 CHTOPQ9Y3Y2 248 aaKnown RBP6.77□□□□□ -1.33
SYNE1-215ENST00000460912 CRYBA4P53673 196 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 SGK494Q96LW2 274 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 RASL11BQ9BPW5 248 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 EPG5Q9HCE0 2579 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 TRAV30A0A087WSZ9 112 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 J3QKU1 62 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms