RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ZC2HC1BQ5TFG8 222 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 SIGLEC15Q6ZMC9 328 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 FAM169BQ8N8A8 192 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 DPF1Q92782 380 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 NGBQ9NPG2 151 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 HHLA3Q9XRX5 114 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 LINC00312Q9Y6C7 94 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 CKS1BP61024 79 aa9.21□□□□□ -0.93
CPSF3-202ENST00000460593 TMEM164Q5U3C3 297 aa9.21□□□□□ -0.93
CPSF3-202ENST00000460593 RASL11BQ9BPW5 248 aa9.21□□□□□ -0.93
CPSF3-202ENST00000460593 C20orf78Q9BR46 151 aa9.21□□□□□ -0.93
CPSF3-202ENST00000460593 FBXL15Q9H469 300 aa9.21□□□□□ -0.93
CPSF3-202ENST00000460593 NPIPB5A8MRT5 1133 aa9.21□□□□□ -0.94
CPSF3-202ENST00000460593 IGLL5B9A064 214 aa9.21□□□□□ -0.94
CPSF3-202ENST00000460593 SIVA1O15304 175 aa9.21□□□□□ -0.94
CPSF3-202ENST00000460593 CT45A10P0DMU9 189 aa9.21□□□□□ -0.94
CPSF3-202ENST00000460593 ODF1Q14990 250 aa9.21□□□□□ -0.94
CPSF3-202ENST00000460593 ZNF474Q6S9Z5 364 aaPredicted RBP9.21□□□□□ -0.94
CPSF3-202ENST00000460593 SEM1Q6ZVN7 128 aa9.21□□□□□ -0.94
CPSF3-202ENST00000460593 DKK4Q9UBT3 224 aa9.21□□□□□ -0.94
CPSF3-202ENST00000460593 IGKV1-17P01599 117 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 EGR2P11161 476 aaPredicted RBP9.2□□□□□ -0.94
CPSF3-202ENST00000460593 HOXB4P17483 251 aaPredicted RBP9.2□□□□□ -0.94
CPSF3-202ENST00000460593 HLA-DMBP28068 263 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 BMI1P35226 326 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 GLRXP35754 106 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 ZNF80P51504 273 aaPredicted RBP9.2□□□□□ -0.94
CPSF3-202ENST00000460593 FDCSPQ8NFU4 85 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 ZNF479Q96JC4 524 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 FER1L6-AS2Q96M78 137 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 TRAV40A0A0B4J280 105 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 INS-IGF2F8WCM5 200 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 C1orf162Q8NEQ5 155 aaPredicted RBP9.2□□□□□ -0.94
CPSF3-202ENST00000460593 CCL17Q92583 94 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 PLSCR4Q9NRQ2 329 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 A0A1B0GV72 72 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 TM4SF5O14894 197 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 IL4P05112 153 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 ZNF493Q6ZR52 646 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 LINC00574Q9H8X3 128 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 U3KQK5 164 aa9.2□□□□□ -0.94
CPSF3-202ENST00000460593 MED13LQ71F56 2210 aa9.19□□□□□ -0.94
CPSF3-202ENST00000460593 TMEM8BA6NDV4 472 aa9.19□□□□□ -0.94
CPSF3-202ENST00000460593 PRR33A8MZF0 331 aa9.19□□□□□ -0.94
CPSF3-202ENST00000460593 CEND1Q8N111 149 aa9.19□□□□□ -0.94
CPSF3-202ENST00000460593 CACNA1HO95180 2353 aa9.19□□□□□ -0.94
CPSF3-202ENST00000460593 COL27A1Q8IZC6 1860 aaPredicted RBP9.19□□□□□ -0.94
CPSF3-202ENST00000460593 FAM27E3Q08E93 113 aa9.19□□□□□ -0.94
CPSF3-202ENST00000460593 PRSS33Q8NF86 280 aa9.19□□□□□ -0.94
CPSF3-202ENST00000460593 EP300Q09472 2414 aaPredicted RBP9.19□□□□□ -0.94
CPSF3-202ENST00000460593 IGHV3-23P01764 117 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 TDHQ8IZJ6 230 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 TMEM158Q8WZ71 300 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 IGHV3-35A0A0C4DH35 117 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 FOXI2Q6ZQN5 318 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 GATD1Q8NB37 220 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 CTSZQ9UBR2 303 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 SMPXQ9UHP9 88 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 TEX22C9J3V5 150 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 E9PLD3 99 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 IGKCP01834 107 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 CRYBA4P53673 196 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 ARRDC1-AS1Q9H2J1 176 aa9.18□□□□□ -0.94
CPSF3-202ENST00000460593 MRPL35Q9NZE8 188 aaKnown RBP9.18□□□□□ -0.94
CPSF3-202ENST00000460593 IGLV3-9A0A075B6K5 115 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 TRAV26-2A0A0B4J265 109 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 LINC01548A6NM66 108 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 K7EQM0 130 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 LAMTOR5O43504 91 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 NDUFA3O95167 84 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 C12orf74Q32Q52 190 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 A0A1B0GWB2 263 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 C19orf67A6NJJ6 358 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 ORM1P02763 201 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 GATA4P43694 442 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 PLGLAQ15195 96 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 GLMPQ8WWB7 406 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 RNF185Q96GF1 192 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 SHANK2-AS3Q9BTD1 123 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 SCNM1Q9BWG6 230 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 SIGLEC9Q9Y336 463 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 ARHGAP32A7KAX9 2087 aa9.17□□□□□ -0.94
CPSF3-202ENST00000460593 IGHG3P01860 377 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 TMEM14CQ9P0S9 112 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 LRBAP50851 2863 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 I3L2K1 104 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 GATA3P23771 443 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 COX7A1P24310 79 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 GAGE13Q4V321 117 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 HIST1H4GQ99525 98 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 PIEZO2Q9H5I5 2752 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 EFNA4P52798 201 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 PTH2Q96A98 100 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 MAP1LC3AQ9H492 121 aa9.16□□□□□ -0.94
CPSF3-202ENST00000460593 A0A1B0GW15 77 aa9.15□□□□□ -0.94
CPSF3-202ENST00000460593 TNFRSF6BO95407 300 aa9.15□□□□□ -0.94
CPSF3-202ENST00000460593 ZNF575Q86XF7 245 aa9.15□□□□□ -0.94
CPSF3-202ENST00000460593 ZNF491Q8N8L2 437 aa9.15□□□□□ -0.94
CPSF3-202ENST00000460593 SPATA25Q9BR10 227 aa9.15□□□□□ -0.94
CPSF3-202ENST00000460593 KLK15Q9H2R5 256 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms