RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 RANP62826 216 aaKnown RBP8.25□□□□□ -1.09
SCN9A-205ENST00000454569 GUCA2BQ16661 112 aa8.25□□□□□ -1.09
SCN9A-205ENST00000454569 CD300EQ496F6 205 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-205ENST00000454569 S100A7AQ86SG5 101 aa8.25□□□□□ -1.09
SCN9A-205ENST00000454569 WFDC3Q8IUB2 231 aa8.25□□□□□ -1.09
SCN9A-205ENST00000454569 TMEM61Q8N0U2 210 aa8.25□□□□□ -1.09
SCN9A-205ENST00000454569 RNF182Q8N6D2 247 aa8.25□□□□□ -1.09
SCN9A-205ENST00000454569 TXNDC17Q9BRA2 123 aa8.25□□□□□ -1.09
SCN9A-205ENST00000454569 ARL2-SNX15V9GYD0 113 aa8.25□□□□□ -1.09
SCN9A-205ENST00000454569 A0A087X0K7 114 aa8.24□□□□□ -1.09
SCN9A-205ENST00000454569 SOCS3O14543 225 aa8.24□□□□□ -1.09
SCN9A-205ENST00000454569 SAP30O75446 220 aa8.24□□□□□ -1.09
SCN9A-205ENST00000454569 SNAPINO95295 136 aa8.24□□□□□ -1.09
SCN9A-205ENST00000454569 TFPI2P48307 235 aa8.24□□□□□ -1.09
SCN9A-205ENST00000454569 RPL11P62913 178 aaKnown RBP8.24□□□□□ -1.09
SCN9A-205ENST00000454569 STXBP6Q8NFX7 210 aa8.24□□□□□ -1.09
SCN9A-205ENST00000454569 C20orf173Q96LM9 149 aa8.24□□□□□ -1.09
SCN9A-205ENST00000454569 ZNF705FA8MVS1 300 aaPredicted RBP8.23□□□□□ -1.09
SCN9A-205ENST00000454569 F6UZH7 168 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 TMEM250H0YL14 139 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 M0R3E3 92 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 PDE6DO43924 150 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 NDUFS6O75380 124 aaKnown RBP8.23□□□□□ -1.09
SCN9A-205ENST00000454569 GALR1P47211 349 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 DCANP1Q8TF63 244 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 GRAMD2BQ96HH9 432 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 MS4A6AQ9H2W1 248 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 Q9H3A6 140 aa8.23□□□□□ -1.09
SCN9A-205ENST00000454569 ZNF331Q9NQX6 463 aaPredicted RBP8.23□□□□□ -1.09
SCN9A-205ENST00000454569 PGPA6NDG6 321 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 IGLL1P15814 213 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 S100A7P31151 101 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 GNG5P63218 68 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 WFDC9Q8NEX5 89 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 GPR82Q96P67 336 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 SIGLEC8Q9NYZ4 499 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 A0A1W2PRE2 83 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 PRAC2D3DTV9 90 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 SCO1O75880 301 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 IGLV1-51P01701 117 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 DYNLRB2Q8TF09 96 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 RPUSD4Q96CM3 377 aaKnown RBP8.22□□□□□ -1.09
SCN9A-205ENST00000454569 NIPSNAP3BQ9BS92 247 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 NKX6-2Q9C056 277 aaPredicted RBP8.22□□□□□ -1.09
SCN9A-205ENST00000454569 NRN1Q9NPD7 142 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 RNF24Q9Y225 148 aa8.22□□□□□ -1.09
SCN9A-205ENST00000454569 ZNF727A8MUV8 499 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 K7EQG2 157 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 M0QZ24 198 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 M0R036 132 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 ZNF674Q2M3X9 581 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 CLRN3Q8NCR9 226 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 ASCL2Q99929 193 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 SMIM7Q9BQ49 75 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 PARLQ9H300 379 aa8.21□□□□□ -1.1
SCN9A-205ENST00000454569 SCO2A0A1W2PP80 73 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 HELTA6NFD8 242 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 TSPAN4O14817 238 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 ZNF705DP0CH99 300 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-205ENST00000454569 ZNF705BP0CI00 300 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-205ENST00000454569 RIPPLY3P57055 190 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 ZNF124Q15973 351 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 FAM74A3Q4VXF1 159 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 ATRAIDQ6UW56 229 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 C16orf92Q96LL3 132 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 SGK494Q96LW2 274 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 LINC00479Q96M42 142 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 DERL1Q9BUN8 251 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 ZNF256Q9Y2P7 627 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-205ENST00000454569 DNAH3Q8TD57 4116 aa8.2□□□□□ -1.1
SCN9A-205ENST00000454569 F6UB75 175 aa8.19□□□□□ -1.1
SCN9A-205ENST00000454569 ZNF688P0C7X2 276 aa8.19□□□□□ -1.1
SCN9A-205ENST00000454569 PDE6HQ13956 83 aa8.19□□□□□ -1.1
SCN9A-205ENST00000454569 RBPMS2Q6ZRY4 209 aaKnown RBP8.19□□□□□ -1.1
SCN9A-205ENST00000454569 TVP23CQ96ET8 276 aa8.19□□□□□ -1.1
SCN9A-205ENST00000454569 OTORQ9NRC9 128 aa8.19□□□□□ -1.1
SCN9A-205ENST00000454569 PPP1R14DQ9NXH3 145 aa8.19□□□□□ -1.1
SCN9A-205ENST00000454569 RPH3ALQ9UNE2 315 aa8.19□□□□□ -1.1
SCN9A-205ENST00000454569 DNASE2O00115 360 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-205ENST00000454569 ZNF253O75346 499 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 SLC25A5P05141 298 aaKnown RBP8.18□□□□□ -1.1
SCN9A-205ENST00000454569 BMI1P35226 326 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 PNRC1Q12796 327 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-205ENST00000454569 LCN12Q6JVE5 192 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 C11orf52Q96A22 123 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 NAT8Q9UHE5 227 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 EPDR1Q9UM22 224 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 IGKV2-40A0A087WW87 121 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-205ENST00000454569 TRAV8-1A0A0A6YYK1 113 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 TRAV34A0A0B4J273 112 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 IGKV2D-40P01614 121 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-205ENST00000454569 PSG9Q00887 426 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 ERCC8Q13216 396 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 RHEBQ15382 184 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 PSG3Q16557 428 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 GDF5OSQ5U4N7 250 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 LYPD1Q8N2G4 141 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 TCEAL7Q9BRU2 100 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 SLC50A1Q9BRV3 221 aa8.18□□□□□ -1.1
SCN9A-205ENST00000454569 NOTCH1P46531 2555 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 491 ms