RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 AKR1C8PQ5T2L2 129 aa11.93□□□□□ -0.5
SF3A1-204ENST00000447376 PQLC2Q6ZP29 291 aa11.93□□□□□ -0.5
SF3A1-204ENST00000447376 BLNKQ8WV28 456 aa11.93□□□□□ -0.5
SF3A1-204ENST00000447376 SAT2Q96F10 170 aaPredicted RBP11.93□□□□□ -0.5
SF3A1-204ENST00000447376 ACTR3CQ9C0K3 210 aaPredicted RBP11.93□□□□□ -0.5
SF3A1-204ENST00000447376 AAMDCQ9H7C9 122 aa11.93□□□□□ -0.5
SF3A1-204ENST00000447376 GOLT1BQ9Y3E0 138 aa11.93□□□□□ -0.5
SF3A1-204ENST00000447376 AGRNO00468 2067 aa11.93□□□□□ -0.5
SF3A1-204ENST00000447376 GIG44P09565 113 aaPredicted RBP11.92□□□□□ -0.5
SF3A1-204ENST00000447376 UBE2L3P68036 154 aaKnown RBP11.92□□□□□ -0.5
SF3A1-204ENST00000447376 HIST1H1AQ02539 215 aaPredicted RBP11.92□□□□□ -0.5
SF3A1-204ENST00000447376 PMS2P11Q13670 270 aa11.92□□□□□ -0.5
SF3A1-204ENST00000447376 RPUSD4Q96CM3 377 aaKnown RBP11.92□□□□□ -0.5
SF3A1-204ENST00000447376 PRELID1Q9Y255 219 aa11.92□□□□□ -0.5
SF3A1-204ENST00000447376 A0A1B0GVG6 124 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 NUPR2A6NF83 97 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 ZNF705EA8MWA4 302 aaPredicted RBP11.91□□□□□ -0.5
SF3A1-204ENST00000447376 SLC17A3O00476 420 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 OR10J4P0C629 311 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 CNN1P51911 297 aaKnown RBP11.91□□□□□ -0.5
SF3A1-204ENST00000447376 FXYD7P58549 80 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 ZFP69Q49AA0 526 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 RPP25LQ8N5L8 163 aaKnown RBP11.91□□□□□ -0.5
SF3A1-204ENST00000447376 OR10J6PQ8NGY7 276 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 C11orf45Q8TAV5 145 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 FXYD5Q96DB9 178 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 TMEM208Q9BTX3 173 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 SLC35B3Q9H1N7 401 aa11.91□□□□□ -0.5
SF3A1-204ENST00000447376 IGHV3OR16-12A0A075B7B8 117 aa11.9□□□□□ -0.5
SF3A1-204ENST00000447376 TPT1P13693 172 aaKnown RBP11.9□□□□□ -0.5
SF3A1-204ENST00000447376 HLA-DMBP28068 263 aa11.9□□□□□ -0.5
SF3A1-204ENST00000447376 LYPD1Q8N2G4 141 aa11.9□□□□□ -0.5
SF3A1-204ENST00000447376 CSNK1G2-AS1Q8NCQ2 148 aa11.9□□□□□ -0.5
SF3A1-204ENST00000447376 OR8A1Q8NGG7 326 aa11.9□□□□□ -0.5
SF3A1-204ENST00000447376 RAB24Q969Q5 203 aa11.9□□□□□ -0.5
SF3A1-204ENST00000447376 MRPL53Q96EL3 112 aaKnown RBP11.9□□□□□ -0.5
SF3A1-204ENST00000447376 IGHV4-28A0A0C4DH34 117 aa11.89□□□□□ -0.51
SF3A1-204ENST00000447376 SMIM9A6NGZ8 99 aa11.89□□□□□ -0.51
SF3A1-204ENST00000447376 INSP01308 110 aa11.89□□□□□ -0.51
SF3A1-204ENST00000447376 SEC11BP0C7V7 166 aa11.89□□□□□ -0.51
SF3A1-204ENST00000447376 LGALSLQ3ZCW2 172 aaPredicted RBP11.89□□□□□ -0.51
SF3A1-204ENST00000447376 EIF5AL1Q6IS14 154 aaKnown RBP11.89□□□□□ -0.51
SF3A1-204ENST00000447376 KLK5Q9Y337 293 aaPredicted RBP11.89□□□□□ -0.51
SF3A1-204ENST00000447376 TMEM189A5PLL7 270 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 UMAD1C9J7I0 102 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 DEFB4AO15263 64 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 HMGB3O15347 200 aaKnown RBP11.88□□□□□ -0.51
SF3A1-204ENST00000447376 NDUFB4O95168 129 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 CXorf1O96002 111 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 STAG3L2P0CL84 134 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 STAG3L3P0CL85 134 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 FAM74A1Q5RGS3 127 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 BAP18Q8IXM2 172 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 Q8NAQ8 132 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 ZNF503Q96F45 646 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 NEU1Q99519 415 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 X6R8D5 127 aa11.88□□□□□ -0.51
SF3A1-204ENST00000447376 CTXND1A0A1B0GTU2 59 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 A8MTW9 85 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 ZNF705FA8MVS1 300 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-204ENST00000447376 BOLA2-SMG1P6H3BVE0 249 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 HBE1P02100 147 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 ZNF705DP0CH99 300 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-204ENST00000447376 ZNF705BP0CI00 300 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-204ENST00000447376 ARL14EPLP0DKL9 152 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 TSPOP30536 169 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 CSN1S1P47710 185 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 RANP62826 216 aaKnown RBP11.87□□□□□ -0.51
SF3A1-204ENST00000447376 ICAM4Q14773 271 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 SPINK13Q1W4C9 94 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 STOML3Q8TAV4 291 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 IGF2BP2-AS1Q96M15 143 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 TMEM167BQ9NRX6 74 aa11.87□□□□□ -0.51
SF3A1-204ENST00000447376 ZNF705AQ6ZN79 300 aaPredicted RBP11.86□□□□□ -0.51
SF3A1-204ENST00000447376 EXOC3-AS1Q8N2X6 119 aa11.86□□□□□ -0.51
SF3A1-204ENST00000447376 PHYHIPLQ96FC7 376 aa11.86□□□□□ -0.51
SF3A1-204ENST00000447376 TEX48A0A1B0GUV7 120 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 M0R2Z0 102 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 EIF3GO75821 320 aaKnown RBP eCLIP11.85□□□□□ -0.51
SF3A1-204ENST00000447376 GCHFRP30047 84 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 CEMP1Q6PRD7 247 aaPredicted RBP11.85□□□□□ -0.51
SF3A1-204ENST00000447376 AMTNQ6UX39 209 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 SLC51BQ86UW2 128 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 IQCF2Q8IXL9 164 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 RXFP4Q8TDU9 374 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 PHLDA1Q8WV24 401 aaPredicted RBP11.85□□□□□ -0.51
SF3A1-204ENST00000447376 Q9H3A6 140 aa11.85□□□□□ -0.51
SF3A1-204ENST00000447376 C11orf94C9JXX5 98 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 M0R3E3 92 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 RBMY1A1P0DJD3 496 aaKnown RBP11.84□□□□□ -0.51
SF3A1-204ENST00000447376 RBMY1CP0DJD4 496 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 CDKN1BP46527 198 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 NANOS2P60321 138 aaKnown RBP11.84□□□□□ -0.51
SF3A1-204ENST00000447376 CD300CQ08708 224 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 RBMY1FQ15415 496 aaKnown RBP11.84□□□□□ -0.51
SF3A1-204ENST00000447376 RRN3P1Q2M238 152 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 DPPA3Q6W0C5 159 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 TMEM256Q8N2U0 113 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 CMTM2Q8TAZ6 248 aa11.84□□□□□ -0.51
SF3A1-204ENST00000447376 OTORQ9NRC9 128 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms