RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 IGFL3Q6UXB1 125 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 MAP1LC3AQ9H492 121 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 IGHV3OR16-10A0A075B7F0 116 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 TRAV30A0A087WSZ9 112 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 C3orf36Q3SXR2 165 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 CT83Q5H943 113 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 PSG9Q00887 426 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 SPANXN1Q5VSR9 72 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 PRSS57Q6UWY2 283 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 TMEM75Q8N9X5 138 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 GFRA4Q9GZZ7 299 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 HLA-DMBP28068 263 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 BVES-AS1Q5T3Y7 98 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 TNFRSF14Q92956 283 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 IFI27L1Q96BM0 104 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 LINC00574Q9H8X3 128 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 KLF12Q9Y4X4 402 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 A0A1B0GXF2 115 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 TMEM160Q9NX00 188 aa9.4□□□□□ -0.9
MSH6-204ENST00000445503 HAX1O00165 279 aa9.4□□□□□ -0.91
MSH6-204ENST00000445503 SMIM12Q96EX1 92 aa9.4□□□□□ -0.91
MSH6-204ENST00000445503 GOSR1O95249 250 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 HBDP02042 147 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 ERCC8Q13216 396 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 GRNP28799 593 aaKnown RBP9.39□□□□□ -0.91
MSH6-204ENST00000445503 LEPP41159 167 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 ZNF491Q8N8L2 437 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 DMDP11532 3685 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 TRAV8-6A0A0B4J262 113 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 CEACAM4O75871 244 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 FAM106CPP0CH98 169 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 RIPPLY3P57055 190 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 FAM106AQ4KMX7 169 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 Q6AWC8 147 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 CCDC144NLQ6NUI1 221 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 FOXC2Q99958 501 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 MLST8Q9BVC4 326 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 MS4A6AQ9H2W1 248 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 LINC00527Q9UJ94 153 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 MUC3AQ02505 3323 aa9.39□□□□□ -0.91
MSH6-204ENST00000445503 C19orf71A6NCJ1 209 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 CLEC19AQ6UXS0 136 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 SHISA9B4DS77 424 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 TEX22C9J3V5 150 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 C5orf64Q2M2E5 130 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 BCL6BQ8N143 479 aaPredicted RBP9.38□□□□□ -0.91
MSH6-204ENST00000445503 SIGLEC8Q9NYZ4 499 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 I3L2K1 104 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 TMEM78Q5T7P6 136 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 CRYGCP07315 174 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 ZNF747Q9BV97 191 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 COL25A1Q9BXS0 654 aaPredicted RBP9.38□□□□□ -0.91
MSH6-204ENST00000445503 C1RLQ9NZP8 487 aa9.38□□□□□ -0.91
MSH6-204ENST00000445503 K7EIM0 57 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 LOXL1Q08397 574 aaPredicted RBP9.37□□□□□ -0.91
MSH6-204ENST00000445503 URB1-AS1Q96HZ7 61 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 PRSS22Q9GZN4 317 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 FAM231BA6NCW3 169 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 RNF182Q8N6D2 247 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 MYOZ3Q8TDC0 251 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 DEFB104AQ8WTQ1 72 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 NEU4Q8WWR8 484 aaPredicted RBP9.37□□□□□ -0.91
MSH6-204ENST00000445503 H3BRN7 92 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 FCN3O75636 299 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 MGPP08493 103 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 SIGLEC15Q6ZMC9 328 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 VGLL1Q99990 258 aa9.37□□□□□ -0.91
MSH6-204ENST00000445503 GAGE12BA1L429 117 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 FABP5P3A8MUU1 101 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 INS-IGF2F8WCM5 200 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 MYCNOSP40205 109 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 RPS20P60866 119 aaKnown RBP9.36□□□□□ -0.91
MSH6-204ENST00000445503 MRPL51Q4U2R6 128 aaKnown RBP9.36□□□□□ -0.91
MSH6-204ENST00000445503 TMEM14CQ9P0S9 112 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 KAAG1Q9UBP8 84 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 NPYP01303 97 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 DLX6P56179 175 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 ANKRD39Q53RE8 183 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 FAM104BQ5XKR9 115 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 C16orf92Q96LL3 132 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 RHOGP84095 191 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 CST9LQ9H4G1 147 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 MSRB1Q9NZV6 116 aa9.36□□□□□ -0.91
MSH6-204ENST00000445503 CD5LO43866 347 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 IGLV1-47P01700 117 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 GTSCR1Q86UQ5 136 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 FABP2P12104 132 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 C15orf32Q32M92 178 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 M0R381 172 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 TAX1BP3O14907 124 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 MEGF9Q9H1U4 602 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 SPCS1Q9Y6A9 102 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 DOPEY2Q9Y3R5 2298 aa9.35□□□□□ -0.91
MSH6-204ENST00000445503 COX8AP10176 69 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 IGHV2-70DA0A0C4DH43 119 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 EGR2P11161 476 aaPredicted RBP9.34□□□□□ -0.91
MSH6-204ENST00000445503 PLP1P60201 277 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 NDPQ00604 133 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 KIR3DS1Q14943 382 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 C7orf69Q9H7B7 122 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms