RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 TMEM189A5PLL7 270 aa4.63□□□□□ -1.67
VPS50-205ENST00000441602 DNAJC9-AS1A6NH13 148 aa4.63□□□□□ -1.67
VPS50-205ENST00000441602 TRGC1P0CF51 173 aa4.63□□□□□ -1.67
VPS50-205ENST00000441602 SNRPEP62304 92 aaKnown RBP4.63□□□□□ -1.67
VPS50-205ENST00000441602 FAM162BQ5T6X4 162 aa4.63□□□□□ -1.67
VPS50-205ENST00000441602 NRN1Q9NPD7 142 aa4.63□□□□□ -1.67
VPS50-205ENST00000441602 SMAD5-AS1Q9Y6J3 95 aa4.63□□□□□ -1.67
VPS50-205ENST00000441602 CR1P17927 2039 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 IGKV2-40A0A087WW87 121 aaPredicted RBP4.62□□□□□ -1.67
VPS50-205ENST00000441602 SNURFLB1AK76 121 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 LGALS9O00182 355 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 IGKV2D-40P01614 121 aaPredicted RBP4.62□□□□□ -1.67
VPS50-205ENST00000441602 RPLP1P05386 114 aaKnown RBP4.62□□□□□ -1.67
VPS50-205ENST00000441602 RBPMS2Q6ZRY4 209 aaKnown RBP4.62□□□□□ -1.67
VPS50-205ENST00000441602 TCF24Q7RTU0 167 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 KLHDC1Q8N7A1 406 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 LENEPQ9Y5L5 61 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 TRAV8-1A0A0A6YYK1 113 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 TRBV12-3P01733 135 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 CDX1P47902 265 aaPredicted RBP4.62□□□□□ -1.67
VPS50-205ENST00000441602 ZNF138P52744 262 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 MYOZ3Q8TDC0 251 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 LINC00477Q96M19 166 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 MRPL18Q9H0U6 180 aaKnown RBP4.62□□□□□ -1.67
VPS50-205ENST00000441602 CREBBPQ92793 2442 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 PTPN13Q12923 2485 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 C19orf71A6NCJ1 209 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 LINC01619G3V211 115 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 MRPL54Q6P161 138 aaKnown RBP4.62□□□□□ -1.67
VPS50-205ENST00000441602 LCNL1Q6ZST4 164 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 PRR25Q96S07 402 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 PPP1R14DQ9NXH3 145 aa4.62□□□□□ -1.67
VPS50-205ENST00000441602 ANKRD17O75179 2603 aaKnown RBP4.61□□□□□ -1.67
VPS50-205ENST00000441602 CFAP46Q8IYW2 2715 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 FAM181BA6NEQ2 426 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 C5orf52A6NGY3 159 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 FABP5P3A8MUU1 101 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 UBE2CO00762 179 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BKO60814 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BJP06899 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 RNASE1P07998 156 aaKnown RBP4.61□□□□□ -1.67
VPS50-205ENST00000441602 HOXA5P20719 270 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BOP23527 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BBP33778 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BDP58876 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BCP62807 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H1AQ02539 215 aaPredicted RBP4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST2H2BEQ16778 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.61□□□□□ -1.67
VPS50-205ENST00000441602 UNQ9165/PRO28630Q6UXU0 137 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 WIPF2Q8TF74 440 aaPredicted RBP4.61□□□□□ -1.67
VPS50-205ENST00000441602 C4orf3Q8WVX3 66 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BHQ93079 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 DUX5Q96PT3 197 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 NEU1Q99519 415 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BNQ99877 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIST1H2BMQ99879 126 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 A8MWP6 167 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 IGLV2-11P01706 119 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 APCSP02743 223 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 SNRPD3P62318 126 aaKnown RBP4.61□□□□□ -1.67
VPS50-205ENST00000441602 HBBP68871 147 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 SRSF2Q01130 221 aaKnown RBP4.61□□□□□ -1.67
VPS50-205ENST00000441602 COX8CQ7Z4L0 72 aa4.61□□□□□ -1.67
VPS50-205ENST00000441602 HIGD1CA8MV81 97 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 NPIPB6E9PJ23 425 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 SH2D1AO60880 128 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 APOHP02749 345 aaPredicted RBP4.6□□□□□ -1.67
VPS50-205ENST00000441602 CRISP2P16562 243 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 TM4SF20Q53R12 229 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 Q6ZSV7 163 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 DYNLRB2Q8TF09 96 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 ZC2HC1AQ96GY0 325 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 TRBV7-9A0A0J9YWB2 115 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 DUSP14O95147 198 aaKnown RBP4.6□□□□□ -1.67
VPS50-205ENST00000441602 FOSL1P15407 271 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 CBLN1P23435 193 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 HOXD3P31249 432 aaPredicted RBP4.6□□□□□ -1.67
VPS50-205ENST00000441602 C9orf47Q6ZRZ4 202 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 NUP35Q8NFH5 326 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 OR1N2Q8NGR9 330 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 IGHV4OR15-8A0A075B7B6 117 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 A0A087WW49 117 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 A0A1B0GUT8 65 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 SPINK4O60575 86 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 SYNJ2BPP57105 145 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 EBLN2Q6P2I7 272 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 BAGE3Q86Y29 109 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 KLHL30-AS1Q8NEE0 82 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 TMEM18Q96B42 140 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 PGLYRP4Q96LB8 373 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 C16orf95Q9H693 158 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 CFAP47Q6ZTR5 3102 aa4.6□□□□□ -1.67
VPS50-205ENST00000441602 USP9YO00507 2555 aaPredicted RBP4.59□□□□□ -1.67
VPS50-205ENST00000441602 NDUFA7O95182 113 aa4.59□□□□□ -1.67
VPS50-205ENST00000441602 ORM1P02763 201 aa4.59□□□□□ -1.67
VPS50-205ENST00000441602 HLA-DMBP28068 263 aa4.59□□□□□ -1.67
VPS50-205ENST00000441602 HILS1P60008 231 aa4.59□□□□□ -1.67
VPS50-205ENST00000441602 KRTAP1-1Q07627 177 aa4.59□□□□□ -1.67
VPS50-205ENST00000441602 IGFL4Q6B9Z1 124 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms