RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 LINC01549A6NIU2 74 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 PRIMA1Q86XR5 153 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 LINC01619G3V211 115 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 GATA4P43694 442 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 HIST1H4AP62805 103 aaKnown RBP13.8□□□□□ -0.2
PTPRF-209ENST00000438120 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-209ENST00000438120 TNFRSF6BO95407 300 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 CFHR2P36980 270 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 DTX1Q86Y01 620 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 TIMM21Q9BVV7 248 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 F5H768 121 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 C17orf58Q2M2W7 97 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 MPV17L2Q567V2 206 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 LY96Q9Y6Y9 160 aa13.8□□□□□ -0.2
PTPRF-209ENST00000438120 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-209ENST00000438120 DIAPH2-AS1Q14236 149 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 CR1LQ2VPA4 569 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 ASPHD1Q5U4P2 390 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 CYYR1Q96J86 154 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 ADCYAP1P18509 176 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 NDUFA4L2Q9NRX3 87 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 IGHV2-70DA0A0C4DH43 119 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 STPG4Q8N801 248 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 TMEM14BQ9NUH8 114 aa13.79□□□□□ -0.2
PTPRF-209ENST00000438120 A0A1B0GUS0 222 aa13.78□□□□□ -0.2
PTPRF-209ENST00000438120 SPTAN1Q13813 2472 aaKnown RBP13.78□□□□□ -0.2
PTPRF-209ENST00000438120 LOXP28300 417 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-209ENST00000438120 SS18Q15532 418 aa13.78□□□□□ -0.2
PTPRF-209ENST00000438120 TRAV8-3A0A0A6YYJ7 113 aa13.78□□□□□ -0.2
PTPRF-209ENST00000438120 ANAPC13Q9BS18 74 aa13.78□□□□□ -0.2
PTPRF-209ENST00000438120 LYL1P12980 280 aa13.78□□□□□ -0.2
PTPRF-209ENST00000438120 TRAV26-2A0A0B4J265 109 aa13.77□□□□□ -0.21
PTPRF-209ENST00000438120 MMP23AO75900 390 aa13.77□□□□□ -0.21
PTPRF-209ENST00000438120 IGHV3-38A0A0C4DH36 116 aa13.77□□□□□ -0.21
PTPRF-209ENST00000438120 ZNF833PQ6ZTB9 187 aa13.77□□□□□ -0.21
PTPRF-209ENST00000438120 C1orf194Q5T5A4 169 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 SRSF8Q9BRL6 282 aaKnown RBP13.76□□□□□ -0.21
PTPRF-209ENST00000438120 C9JQL5 133 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 LMO1P25800 156 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 FAM120AOSQ5T036 256 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 LY6G5BQ8NDX9 201 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 LEPROTO15243 131 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 Q8TCH9 128 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 TP53TG1Q9Y2A0 90 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 ESDP10768 282 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 PTPRDP23468 1912 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 IGLV3-9A0A075B6K5 115 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 LINC01559Q495D7 138 aa13.76□□□□□ -0.21
PTPRF-209ENST00000438120 FNDC1Q4ZHG4 1894 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-209ENST00000438120 MYMXA0A1B0GTQ4 84 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 GAGE12BA1L429 117 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 ITGB1BP1O14713 200 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 GAGE7O76087 117 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 GAGE12FP0CL80 117 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 GAGE12GP0CL81 117 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 GAGE12IP0CL82 117 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 PAX9P55771 341 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 PDE6HQ13956 83 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 C2orf82Q6UX34 121 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 TEX36Q5VZQ5 186 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 DAD1P61803 113 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 PYY3Q5JQD4 70 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 TRPT1Q86TN4 253 aaKnown RBP13.75□□□□□ -0.21
PTPRF-209ENST00000438120 SIGMAR1Q99720 223 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 WNK2Q9Y3S1 2297 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 FNDC10F2Z333 226 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 PFN1P07737 140 aaKnown RBP13.75□□□□□ -0.21
PTPRF-209ENST00000438120 GATA3P23771 443 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 C8orf86Q6ZUL3 223 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 TMEM75Q8N9X5 138 aa13.75□□□□□ -0.21
PTPRF-209ENST00000438120 TCTEX1D4Q5JR98 221 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 ARTNQ5T4W7 220 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 IGFBPL1Q8WX77 278 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 ZNF407Q9C0G0 2248 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 ZNF134P52741 427 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 CEACAM8P31997 349 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-209ENST00000438120 NEGR1Q7Z3B1 354 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 ZNF48Q96MX3 618 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-209ENST00000438120 IGFL3Q6UXB1 125 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 A0A096LPF7 62 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 CDK2AP2O75956 126 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 IGKV1-39P01597 117 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 IGKV1D-39P04432 117 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 AZU1P20160 251 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 OCIAD2Q56VL3 154 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 TMEM190Q8WZ59 177 aa13.74□□□□□ -0.21
PTPRF-209ENST00000438120 MRPL27Q9P0M9 148 aaKnown RBP13.74□□□□□ -0.21
PTPRF-209ENST00000438120 TRBV19A0A075B6N1 114 aa13.73□□□□□ -0.21
PTPRF-209ENST00000438120 FAM215AQ9Y5M1 114 aa13.73□□□□□ -0.21
PTPRF-209ENST00000438120 TICRRQ7Z2Z1 1910 aa13.73□□□□□ -0.21
PTPRF-209ENST00000438120 KIR3DS1Q14943 382 aa13.73□□□□□ -0.21
PTPRF-209ENST00000438120 RSPO3Q9BXY4 272 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-209ENST00000438120 YPEL3P61236 119 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-209ENST00000438120 VWC2LB2RUY7 222 aa13.73□□□□□ -0.21
PTPRF-209ENST00000438120 PFN2P35080 140 aa13.72□□□□□ -0.21
PTPRF-209ENST00000438120 WT1-ASQ06250 92 aa13.72□□□□□ -0.21
PTPRF-209ENST00000438120 MST1LQ2TV78 715 aa13.72□□□□□ -0.21
PTPRF-209ENST00000438120 CHAC1Q9BUX1 264 aa13.72□□□□□ -0.21
PTPRF-209ENST00000438120 NDUFS7O75251 213 aa13.72□□□□□ -0.21
PTPRF-209ENST00000438120 C1orf147Q96MC9 270 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms