RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TRAV3A0A0B4J244 114 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 MUC21A0A0G2JKD1 596 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 MUC21A0A140T8X8 626 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 hDV103S1A0JD37 113 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 FNDC10F2Z333 226 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 IGLV6-57P01721 117 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 TRACP01848 142 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 IGKV4-1P06312 121 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 CSRP1P21291 193 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 PEBP1P30086 187 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 ETV6P41212 452 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 PCBD1P61457 104 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 SNRPD3P62318 126 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 CIRBPQ14011 172 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 ZNF791Q3KP31 576 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 RPS19BP1Q86WX3 136 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 OR5AK2Q8NH90 309 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 PSMG3Q9BT73 122 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 SAR1AQ9NR31 198 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 SPEF2Q9C093 1822 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 MRC2Q9UBG0 1479 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 N4BP2Q86UW6 1770 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 TRAV1-1A0A0B4J248 108 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 A0A0G2JMM0 328 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 FAM236AA0A1B0GUQ0 79 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 FAM236BA0A1B0GV22 79 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 A0A1W2PPB8 328 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 C20orf202A1L168 122 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 KIR3DP1A8MWS1 328 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 UBL3O95164 117 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 FGF7P21781 194 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 RPL26P61254 145 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 BLCAPP62952 87 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 CDK6Q00534 326 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 FGD6Q6ZV73 1430 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 Q8IYB0 196 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 TMEM254Q8TBM7 123 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 COPS9Q8WXC6 57 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 CLEC2BQ92478 149 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 MUCL1Q96DR8 90 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 SLC50A1Q9BRV3 221 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 SHANK3Q9BYB0 1731 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 METTL1Q9UBP6 276 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 RPL26L1Q9UNX3 145 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 CCNB3Q8WWL7 1395 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 GREB1Q4ZG55 1949 aa2.72□□□□□ -1.97
CCDC88A-206ENST00000430086 SLX4Q8IY92 1834 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 IGKV2-24A0A0C4DH68 120 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 PYYP10082 97 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 MIFP14174 115 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 CKS2P33552 79 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 SS18Q15532 418 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 SCIMPQ6UWF3 145 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 Q6ZTI0 123 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 C10orf111Q8N326 155 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 CCL4L1Q8NHW4 92 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 RAB37Q96AX2 223 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 KDM5BQ9UGL1 1544 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 NALCNQ8IZF0 1738 aa2.71□□□□□ -1.98
CCDC88A-206ENST00000430086 IGLV10-54A0A075B6I4 117 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 TRBV20-1A0A075B6N2 111 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 C9orf170A2RU37 121 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 CORTO00230 105 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 CRPP02741 224 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 ASAH2BP0C7U1 165 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 AKAIN1P0CW23 69 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 SLC25A4P12235 298 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 ASB16-AS1Q495Z4 193 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 CLLU1Q5K131 121 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 KCNRGQ8N5I3 272 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 PPP3R2Q96LZ3 170 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 C20orf166-AS1Q96NR2 134 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 SLC35B3Q9H1N7 401 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 CST9LQ9H4G1 147 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 FKBP11Q9NYL4 201 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 CCL26Q9Y258 94 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 DNAJC15Q9Y5T4 150 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 WDR90Q96KV7 1748 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 SYNJ1O43426 1573 aa2.7□□□□□ -1.98
CCDC88A-206ENST00000430086 MYOM3Q5VTT5 1437 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 CCDC88AQ3V6T2 1871 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 ZNF93P35789 620 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 RBP2P50120 134 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 ROMO1P60602 79 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 ZNF846Q147U1 533 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 LINC01545Q5VT33 79 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 C2orf82Q6UX34 121 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 OR5AS1Q8N127 324 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 Q8N814 137 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 CIB3Q96Q77 187 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 PRO2289Q9P1D8 64 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 TRPM6Q9BX84 2022 aa2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 COL1A1P02452 1464 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-206ENST00000430086 ARHGAP31Q2M1Z3 1444 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 IGKV2D-26A0A0A0MRZ7 120 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 IBA57-AS1B1ANH7 110 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 ZNF737O75373 536 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 S100A8P05109 93 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 CCL4P13236 92 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms